SimpleSearch - Line and FST details
Line specific information
| Line ID | 369C09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N435361) |
| Segregation Analysis | 100:77:64 |
| Confirmed for Hit | T15N1 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit T15N1
| Sequence (A. th genome BLAST matches underlined) | >67-K017093-022-369-C09-8409 TTTCCCGGACTGAAGCCATTTTGCATGTTTGGCATGAACCGGTTGCGTGTTGGACGAACT CATTATTCATATCATTACAATGTTGTTGTTTTTTTTGCTAAAGGTATCATTACAATGTTT GATTTATCAGAAAAATTATTGTGTATACTTTTCATGATGATTGACAAATTAAAATAAAAA TTATATTTGTGATAATCCTTTTGCACCGGCCAGTCGGGCCAGAAACAAAATTACGTGTTG TTGAAATTGGCTTTATTTGCTCGTTATTGACTTATTGTTAGTTATCCGAAATAGGAAGAA TTTATAAATTTTCCACGAACACCAACTCTACCGCCCTTTACAACAACCACCCTCCACGCA AACCACATTCGTACAATTACAAATAACAATGATTCTCATTTTTTTTATTTCATAATGATT TATCATTACACTAAACAAATAAATAAAGCATAATTTAAAAGAAGAAAAGAATAAGAGCAA AACGTTACGTCAATAGCTTAGAACTGCTCTGTTTAATTTTTGTCGTCGTGCCTATGG |
| GenBank Accession | BX003091 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:4739987 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T15N1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g14660
| Sequence (A. th genome BLAST matches underlined) | >67-K017072-022-369-C09-8409 TGATCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCAGGATATATTTGAAC AGCTTGCATGACTGGCATGAACCGGACAATATTCAGTTTTTCCGCTTTCAACGACCACAA TCTGTCAAGATTGATGCTAGGGATATTACTGGTGAAAGATTTTCATTCAGGCTATCACGT TTACCTGCACGAATCTTTCAGCACGAATACGACCATCTGGAGGTTTGTTCTCCACTTTTA TTNTGATAACTTTGCTTGAGGGAAACGACAATCTGATCCCCGGGTACCCTGTCCTCTCCA AATGAAATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGGATAGTGGGATTGTGCGT CATCCCTTACGTCAGTGGAGATATCACATCAATCCACTTGCTTTGAAGACGTGGTTGGAA CGTCTTCTTTTTCCACGATGCTCCTCGTGGGTGGGGGTCCATCTTTGGGACCACTGTCGG CAGAGGCATCTTCAACGATGGCCTTTCCTTTATCGCAATGATGGCATTTGTAGGAGCCAC CTTCCTTTTCCCCTATCTTCACAATAAAGTGACAGATAGCTGGGCAATGGAATCCGAGGA GGTTTCCGGATATTACCCTTTGTTGAAAAGTCTCAATTGCCCTTTGGTCTTCTGAGACTG TATCTTTGATATTTTTGGAGTAGACAAGCGTGTCGTGCTCCACCATGTTGACGAGGATTT TCTTTCTGTCATTGAGTCGTAAGAGACTCTGTATGAACTGGTTCGCAGTCTTTACGGCGA GTTTCTGTAGGTCCCTCTATTGAATCTTTGACTCCATGGGAATTGGGGACCTCT |
| GenBank Accession | BX003090 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:4727922 - go to primer design |
| BLAST e Value | 1e-71 |
| Hit Clone Code (BAC ID) | T15N1 |
| Hit Gene Code | At5g14660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | peptide deformylase 1B |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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