SimpleSearch - Line and FST details


Line specific information

 
Line ID 402D05
Vector Used pAC161
Line Availability available as T3 set from NASC (N438537)
Segregation Analysis 50:50:50
Confirmed for Hit At5g20730
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit MLD14

 
Sequence (A. th genome BLAST matches underlined) 
>36-K017863-022-402-D05-8409
CATATGATAAAGTATTTGGGAGAGTTTTAATATTCCCTTCATACTATCATCTATCGGATC
TTGCCTATAGTGAGACGAAGGGATCCACCCTCTCCCCAGTTGTTTGGCATCATAAAAAGA
TAAAGGCCCCAGCCTTTTTATACAACGAAAGAACTTTTTGATAAAACGACAAATTACGAT
CCGCCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTC
GACGTGTCTACATTCACGTCCAAATGGGGGCTTAGATGAGAAACTTCACGATCGATGCCT
TGATTTCGCCATTCCCAGNNNNNNNNNN
GenBank Accession FR809635 [GenBank]
Graphic View Graphic view of sequence FR809635 of line 402D05
Predicted Position of Insertion Chr3:6693713 - go to primer design
BLAST e Value 1e-09
Hit Clone Code (BAC ID) MLD14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g20730

 
Sequence (A. th genome BLAST matches underlined) 
>36-K017817-022-402-D05-8409
ATGATCAGCGGACCAGGACAACTACCAAAAGGTCTGCTAAAGCACAGGAACAGCTTTTTC
TTCTTCCTCTCCTTTTTTTTTCCTTCTCTTTTCTTTTTCCGATATTTTTATTTTTTTATA
CCTATTTAGTTATGCTCATGAAGCCGACATATTCACTATGGGATCCTCCCCTATAGTGAG
AGGAANNNGAAAGGGGNTTGCGGGTGAATTTTTAAGGAAAAAATGATGATATACCCATGG
TATAGATAAAAAGAAAAGTCATTGGAGTAAAAAAAAAAAATACCGATCCGGCCATTTTAA
AGGCGAAACCAATAGAAGAGTTTATTCTAAATCGGGAAATTCTTTATTTCAACGGGTCTA
CCTTTCCCGTCCAAATGGGGGGCTTAGATGGAGAAACTTCACG
GenBank Accession BX287531 [GenBank]
Graphic View Graphic view of gene At5g20730
Predicted Position of Insertion Chr5:7021999 - go to primer design
BLAST e Value 1e-16
Hit Clone Code (BAC ID) T1M15
Hit Gene Code At5g20730 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-like protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37