SimpleSearch - Line and FST details
Line specific information
| Line ID | 428B11 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At1g49480
| Sequence (A. th genome BLAST matches underlined) | >82-K018077-022-428-B11-8409 TAAGTAGATTCAGGGTTCGATGGATAAATGACCTTAGCATCTTTGAGTTCAGGATCTTCA AACAATCGAGCACGTTTGTTGAACTGATTCTGTGCGGAATCCATTTGCATAAGAGCTTCA CTACTATGGGATCCTCCCTATAGTGAGACCANTTTCCCAAACAACTTCCGCGGTCCGCCG TCTCCAAACATTATTTTTTTTTAACGGAAGATAACAAGAAAGATAGTAAATGCCGGAGAA AGACCCACTAACCCTCATAAATAAAATCTCACCGGTCGCAAACACAAACCGTTCCTCGCC CCCACATCCCTATACTTTTTCCCACCCATTTCCACCTCTACCGATCTACCACCCGCAACA CAATAATGAATGATACGCTTCCCTACAACTCAATTCGATCCCTTACGCTGCCCCCTCCGA CTACTCCGCCCTCCACCGTTTCACGTCGGCACTATCCCCATTCTCACCCCATCCCCTCGT ATACCCCGCAACAATACCGTATATATAAGCCGCTTCGTCGCCTCACCATTTTTTCACGTA TTCCGCCATTCCTCGACCACCTTCCCATGGCTTCCGATTCACACTCATT |
| GenBank Accession | BX289575 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:18315246 - go to primer design |
| BLAST e Value | 8e-64 |
| Hit Clone Code (BAC ID) | F13F21 |
| Hit Gene Code | At1g49480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | related to vernalization1 1 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 429B11 |
Gene hit T2J15
| Sequence (A. th genome BLAST matches underlined) | >82-K018097-022-428-B11-8409 GGACATGAGCATTTACAATTGGATATATCCTGATGTAGAAAAGGATATTCGTATAAAGTT TTCATGCAGAAAAAAAATAAAAATAAAGTTTTCATGCATGCATATATGTGGCTATGGGAT CTTCCCTATAGTGAGAGCACTTACATGTGTGACCGGTTCCCATTGTTCGGCTTTGGGTTC CCAATGTACGGGTTCCGGTTCCCAATGTACGGCTTTGGGTTCCCAATGTACGTGCTATCC ACAGGAAAGAGACCTTTTCGACCTTTTTCCCCTGCTATGGGATCCTCCCTATAGTGAGAN NNNNNNNNNNNGNNNGNCNNNNNGNNNNNNCNNCTCTCNCTGCCGCACNTCNCCCCGGCN NNNNNNTAAGGGNCNNCCCCCGCCGCCCGCCCCGGCNNGGNCNCACNCCGTCGGTGGGGG GTACTTCCTCGGGACCTATTTACTACCCTGTAATTCTACCAATACATTACAATTATTGG |
| GenBank Accession | BX289576 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:17715364 - go to primer design |
| BLAST e Value | 4e-07 |
| Hit Clone Code (BAC ID) | T2J15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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