SimpleSearch - Line and FST details


Line specific information

 
Line ID 535E06
Vector Used pAC161
Line Availability available as unconfirmed T2 stock from NASC (N2109465)
Segregation Analysis unknown
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g55803

 
Sequence (A. th genome BLAST matches underlined) 
>535E06-LB-1-20858455-F-150-a
AGCAACAAATATATGTACTTTATGGGCTTAAACCAAATCTAATCAGTGATCACCTTTTTC
TTTTGTGGGTAAAGTGAATCGTCATTTCCATTGTCTGGAGAAGCTAAACCGTCCCTCTTC
TATACATCAACAGAGCAAGTTACGTTAGTA
GenBank Accession KG787549 [GenBank]
Graphic View Graphic view of gene At1g55803
Predicted Position of Insertion Chr1:20858455 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) F20N2
Hit Gene Code At1g55803 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ferredoxin-fold anticodon-binding domain protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At1g72960

 
Sequence (A. th genome BLAST matches underlined) 
>535E06-LB-1-27449515-R-150-a
GTGTCATTGAAACGAAGGCAAAAGAAGAGGCTGTGCGGGTTTTGATGCGTATGAAGGAAA
GGTATAGCAAGGCTTCTTAATGTGCCCAGTGATCTTTCAAAACCAGTTTCAAACAACCAT
TTAATCTTGAATCTGGTTGTAATTTTTTTT
GenBank Accession KG787550 [GenBank]
Graphic View Graphic view of gene At1g72960
Predicted Position of Insertion Chr1:27449515 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) F3N23
Hit Gene Code At1g72960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Root hair defective 3 GTP-binding protein (RHD3)
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit KG787550 [GenBank]

Gene hit At5g65925

 
Sequence (A. th genome BLAST matches underlined) 
>535E06-LB-5-26368890-R-150-a
AATTAAACTATAGATTAATATTTTGTGAATTTTTAATAAGATAAGTATCACCAAACCGTA
AACATCCAACTAGATACATTTATATATACATACCCTAATAATTATTATTTCTGAAATGCA
TTTAAAACGAAGTCTATCATACACGGCATC
GenBank Accession KG787551 [GenBank]
Graphic View Graphic view of gene At5g65925
Predicted Position of Insertion Chr5:26368890 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) K14B20
Hit Gene Code At5g65925 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit KG787551 [GenBank]


Last Updated on 10.06.2021 13:37