SimpleSearch - Line and FST details


Line specific information

 
Line ID 007G05
Vector Used pAC106
Line Availability available as T3 set from NASC (N400653)
Segregation Analysis 50:49:38
Confirmed for Hit At1g06960
Parent of DUPLO pair 2747
Parent of pair(s) none
Note

Gene hit At1g06960

 
Sequence (A. th genome BLAST matches underlined) 
>39-K014809-022-007-G05-8409
NTGATCCATGGTAGATTTCCCGGACATGAANGCACTTTACAATTGATCCTATACTCATTT
GCAACAAATATGCTTCATCTCTCTCTCTCTTTTTCTCTCACTTCCCTTTTTGTCTCTGAC
CTTTAAACAAAACTTAGATACCATTCTATATGTGACGCTATATAGAGAGTCACAATTCCC
CAAAATAAAAACAGAGTCCTCTGTTTTGTTCTTCATCTCTCACTAAGAGATTCTCATCTG
TCGGCATCAAGTAGGTTCTGCATATTTAGAGAGAAATCTCTCTTCCTCCACGTTCTTCTC
ACTGTCTTTGGTACGCACAAAAAGAACAGAGCGATGTCAAAGCTATGGGATCCTC
GenBank Accession AL751801 [GenBank]
Graphic View Graphic view of gene At1g06960
Predicted Position of Insertion Chr1:2137833 - go to primer design
BLAST e Value 5e-111
Hit Clone Code (BAC ID) F10K1
Hit Gene Code At1g06960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA-binding (RRM/RBD/RNP motifs) family protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g16250

 
Sequence (A. th genome BLAST matches underlined) 
>39-K014799-022-007-G05-8409
NTGATCCATGTAGAATTTCCCGGACATGAANGCATTTACAATTGATCCATATACTCATTT
GCAACAACATATGCTGCAATCTCTCTCTCTGTTTTTCTCTCACTTTGCTTTTTGTCTATG
ACCTTAAAACAAATATTAGATACCATCCTTTAGGGAGGCTCCCTATGAGAGTGACTTTGC
TTGTACTTCTGTCTCTGGCAAGGTTTATGTTGCTGGAGGTCGTAATTTAACTCATTCCAG
GGGAATCCCATCTGCTGAGGTTTATGATCCTGTCGCTGATAGGTATTTTTTCCCACACTA
ATGTGGTTTATATTCTCGCGTAGGATAGAACTGGCATATTTAACCCCACAATGTACTCTT
TTTGTTTTTTTCTATGATGGGTCAAGATATAGTTTTAAAAGTTTTCTCATGTTTCACCTG
AAAAGCTATCAAACTGGAGTATGACATAGTAGTATTGCAGGTGGGAGGAATTACCAGCAA
TGCCTATGGGATCTC
GenBank Accession AL751800 [GenBank]
Graphic View Graphic view of gene At1g16250
Predicted Position of Insertion Chr1:5557722 - go to primer design
BLAST e Value 6e-151
Hit Clone Code (BAC ID) F3O9
Hit Gene Code At1g16250 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Galactose oxidase/kelch repeat superfamily protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37