SimpleSearch - Line and FST details


Line specific information

 
Line ID 008E03
Vector Used pAC106
Line Availability available as T3 set from NASC (N400723)
Segregation Analysis 50:48:43
Confirmed for Hit At3g21720
Parent of DUPLO pair none
Parent of pair(s) 96732, 96739, 96743

Gene hit At3g21720

 
Sequence (A. th genome BLAST matches underlined) 
>26-K016981w-022-008-E03T-8409
TGATCTGTAGATTTCCCGGACATGAAGCCATTTACAATGGAATATATCCTGCGGACATCA
CCTATATATGAAAAAGGGTAACGTCATTGTTAATTTTGAAAGAAAAAATATTCTATAATT
GGATTACTTCTACCGGGTTTTTTCACTACGTACTACTTAATGCATTTATATTTTCTACAT
TACCTATAATAGAAGTGTAATAGAAATGACTCTATTACTTGTCTCGACCAACCGGACGAA
TCTTTAGTAACCAAACAATTATAGTTGAAAGATATAAAGAACGTCACATATAAACTCCTT
TTCATTGTTCTTATAAGCAGAATCTTATCATAACACACTATTATTTCACTAAAGTTACTT
TATGTGAGCAAATAAATGTTAAAAACATAAACTAACATACCTTTTCCCATGGCTGCAGTG
GAGGAGATTCCACCTTGGACGGTCTTAAGATAACGATCATAGTAATTAGCACCGGACCAT
TTCTGGTGAGCCAAAGTGTCAACCCCATGGGTCCTCTCTTCTCTTTGTATCCTCTCCACA
TAAGCCAACATCCCGCGCCTA
GenBank Accession AL935888 [GenBank]
Graphic View Graphic view of gene At3g21720
Predicted Position of Insertion Chr3:7652884 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MSD21
Hit Gene Code At3g21720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation isocitrate lyase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR799951 [GenBank]

Gene hit At3g58960

 
Sequence (A. th genome BLAST matches underlined) 
>21-K014810-022-008-E03-8409
TTGATCCATGGTAGATTTCCCGGACATTGAAGCATTTACAATTCCGTTATCTGTAGGGAG
TGGGTGAAGGGGCTATAGCATTCCTCTTATTAGTGAGTGATACTGTGGCTGTAAGTGTGC
TCCTTTTTTTTTACTCTTTGCTACTTTTAACCTTTTCACTTATCGTTGCTTCACTTCCGC
TTCCGGGTGGTATAAAAATCAAAATCTCGTTTGATATGAAATTGTTTCTTGAGGTTATGA
TTTTTATTTTTATTTTTGTTCTTCAGGCGGTTTATTTCTCCAATGAAGCAATCCCAGTAT
TTGAAAACTTGCATCGTTTATCTATTGCAACTGAACGTGAATTCTGTTGGCGAACTCTGC
CATATCTGATAAAAAAGTCTCCAAATCTATGGGATCC
GenBank Accession AL751881 [GenBank]
Graphic View Graphic view of gene At3g58960
Predicted Position of Insertion Chr3:21787944 - go to primer design
BLAST e Value 1e-105
Hit Clone Code (BAC ID) T20N10
Hit Gene Code At3g58960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box/RNI-like/FBD-like domains-containing protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit AL751881 [GenBank]


Last Updated on 10.06.2021 13:37