SimpleSearch - Line and FST details
Line specific information
| Line ID | 011A04 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400964) |
| Segregation Analysis | 100:88:86 |
| Confirmed for Hit | At3g51990 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4112, 4118, 4236, 7240 |
| Note |
Gene hit At1g75500
| Sequence (A. th genome BLAST matches underlined) | >25-K012433-022-011-A04-8409 ACATGGACGAGTTTCTTGCTGTCTCTGGATTTCAAGGATAAAGCTTCAGACATGGCCTAT GTTGCACATAAGCTAGATCGGCTTGAAATGGTCTTGCCCAATGATATTGCCTCTTCTATG GGATCCTGCCTATAGTGAATCGCTTTACTCACGTGTGCTTCCTTTAAACCCCTCGCATTT CACAGGATCAAACTGGGGATTGTAATTGCCTCAAATTGCCCTATTACTATTTTAAACATA AATATTTTGGCTTTGGGATCCTCCCTATAGTGAGTCAACTTACTAATCCGGCCCTGATCN CGTGGGCTACTCCTTATATACCCTGCCATTGCACGGCTATAGGACGCACCCACTTGGTTG TGGTGCCCCCCTAGAGGCCGAATACGAATTAATTATGACAGTACTACCTATAACGAACGG CGTTACATGATGGTGACAAGCTCCCCACCGGGGTGAAAAACCCAAGCCTGAGAATCTCTT TCCACAGAAGCAGCAGTGATCAAGACCTGAATGATTCCTAAGAAACAGGTGTTTGACGTT ACCGAGAGCCTCGCTGGAATAAACTTAAGACCCGGACCTTGCAAAACAGCCAGCCTGACC ACGAGAAACAGTGACCGATTAGGGAGATGCAACCAAGGGGCCCGTTTTTTAGCGCCGCGG TTCCTAG |
| GenBank Accession | AL752084 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:28338408 - go to primer design |
| BLAST e Value | 5e-62 |
| Hit Clone Code (BAC ID) | F1B16 |
| Hit Gene Code | At1g75500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Walls Are Thin 1 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 013A04 |
Gene hit At3g51990
| Sequence (A. th genome BLAST matches underlined) | >38-K028184-022-011-A04t-8409 ATTTACAATTGAAGAAGATTTTAATGGCGTGAGTCGTGAGAAGTCATTTTTGTAAATTAA GGCACATTTGATTAGACTCAAGGAAGTGGAGGGGTCGTGTTTCTAATTAATTATGCCTTT TCCTAAATATTTCAAATCCACCCTTATAGTTTTTAAAAATTCTATTTCGTATGGGATCCT CCCTATAGTGAGTCNTATTACTCACGCCGGTGGGGGTTTTCCCTTT |
| GenBank Accession | CR769869 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19287937 - go to primer design |
| BLAST e Value | 1e-80 |
| Hit Clone Code (BAC ID) | F4F15 |
| Hit Gene Code | At3g51990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR800014 [GenBank] CR769868 [GenBank] CR769868 [GenBank] |
Gene hit At5g17490
| Sequence (A. th genome BLAST matches underlined) | >25-K012257-022-011-A04-8409 AGACATGGCAGATGGTGCACAGAAGCTAGAACAGATGGAAAGGGNCGTGACCAATGATAT GGCCTGTTCTATGGGATCCTCCCTATAGTGAGTCGTATTACT |
| GenBank Accession | FR800013 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5765863 - go to primer design |
| BLAST e Value | 8e-09 |
| Hit Clone Code (BAC ID) | K3M16 |
| Hit Gene Code | At5g17490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RGA-like protein 3 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR800013 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
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