SimpleSearch - Line and FST details
Line specific information
| Line ID | 011C07 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400991) |
| Segregation Analysis | 50:45:38 |
| Confirmed for Hit | At1g32990 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 8033 |
| Note |
Gene hit F13F21
| Sequence (A. th genome BLAST matches underlined) | >51-K012433-022-011-C07-8409 NTGATCCATGTAGAGTTTCCCGGACATGAAGCACTTTACAATTTCCCGGAGAGAAAATTA TTACTGATGTGATTTTAATGCTAAATTCAACCCTCCTTTTAGATTAGTGCGAGTTAATGG TTAATAGTAGAATCCTTCCTTTTATTATTAATGTTATTGTTTCTACGAGCTCCACTATGG GATCCTCCCTATAGTGAGTCGTTNTACTCACNGNNNGGGGAAGAGGGATCTGTGAGATTC TTCAATGAACTATTGGTATCCTCCCAGAGCGGAGTCGTAAACGTCAGTACATCCTGCACA AACGACCATGATCGATCCGGAGCATGTATTGGCGATCAGCGTTAACAAATGCTTACTATG CGGAAAATTTTATTTCGACGTGTCGACATTAACGATCGGATGGGGAGAGTGTCTATGGGG AGGACCCAATAAGGTAGCTTCAAGAGACGATAGAATAACATTCCTGCGTGGGAATGCATC TTTACCTACATTAGCCTATACCTTACGGATGGTTGAAGACATAAGGAAAAGCATCACTGA AATATTCCCACCGGGAATGCCTATTGGTGAGGTTCTGAAGTCCTTTGGGAAGCCTTGAGG ACTAATGGCCTGTGGGAAAGACAAAATCATTATGCCACAT |
| GenBank Accession | AL752146 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:18274058 - go to primer design |
| BLAST e Value | 2e-58 |
| Hit Clone Code (BAC ID) | F13F21 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL752145 [GenBank] |
Gene hit At1g32990
| Sequence (A. th genome BLAST matches underlined) | >22-K115037-0022-011-C07C-3144 NNNAAAGGAGGAGACAATCCACTATCTTGCAGACCCTTCCTCTATATAGGAAGTTCATTT CATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGACCCGACCTGAACTGCACGACCAT TGAATCCGCTATGAGAATCATTGCAGGAACTGCAGCTAACATGGGGATAGACATTGACCC TCCGATTCTTGAACCCAAAAAGAAAGCAGTTTTATTGTAAAAGCCTGGTTGGTAGTTTCT ATTCCATAATGCCTTATTCGTTTCAAAGTGTAATTTTCCAACATGACGCTTAAGAGAGTT CGATATAATGATGCAACATGTATGTGTTTTTTTTGTTTTTATCAAAAATGAAATTTAACA AGTGCAACTTGAAACGCATGAATGGTTTACAGTCTCAAGAATTGGTAAGGCATGTAATCA TTGTGATTGTATACGAAACAGAACACAAATAAGGGATTATTTAATGCCAATGACCATTGT TTACCTCTCGTCTCTATACAAACCAAAGTGTCTTGTGTATTCAATTCTGATGAGCCGCTN ATGTATAAGAGGTGAGACTGTTG |
| GenBank Accession | HE664177 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:11957016 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F9L11 |
| Hit Gene Code | At1g32990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plastid ribosomal protein l11 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g06620
| Sequence (A. th genome BLAST matches underlined) | >51-K012256-022-011-C07-8409 TTTTGGGATCCATGTAGANTTCCTGGACATGAAGCGATTTACAATTGCCCGGAGAGAAAT ATTATTACTGATGTGATTTTAAGGCTAAATTCAACCCTCCTTTTAGATTAGGTGCGAGTT AATTGTTAATAGTAGAATCCTTCCTTTTATTATTAATGTTATTGTTTCTACGAGCTCCAC TATGGGATCCTCCCTATAGTGAGTCGTATTACTCATGGGATGGGAACACGGAGCTGTGCT CTCACACACTAGATCTATGGGATCCTTCCAAGCGGGAGTCGTAGTAACGAATTACGAATA CACAAACGGTCATCATACAACAAGAACCCGTAATGTCTATAATATTTTCCAAATGCAAAC TTTTCACAAGATGAAGATATCTTTGGAAAGACAGAGTCATCGGGATAAAGAGATTCTATA TGCTCAAAACCGAGTAACCTTAGCGTCAAGAGATGAGAGAAGAACATACCTGCTTGACAA TGCATCCGCACCTACATTGCCCATACGTTGCTTATATCAGACGACGTAAGGAAACGACTC CATGAATCTCACCCACCTTGCATGGCTGTTGTTGGGCTCCTGCTGGCCTTAAAGAAGCTT CAAGGGCGCATGGGCCTGTGTGAATGACAAACTCCTTAGGCCAGAGTAAAGGTTGCCACG TCGGGCACAGAAAATAGGAGTTTTAGACAATTATCCCAAAACACC |
| GenBank Accession | AL752144 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:3735421 - go to primer design |
| BLAST e Value | 3e-94 |
| Hit Clone Code (BAC ID) | T11G11 |
| Hit Gene Code | At4g06620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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