SimpleSearch - Line and FST details


Line specific information

 
Line ID 013A03
Vector Used pAC106
Line Availability available as T3 set from NASC (N401155)
Segregation Analysis 50:44:44
Confirmed for Hit At2g35150
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g38378

 
Sequence (A. th genome BLAST matches underlined) 
>17-K025780-022-019-A03-8409
GCTATAAAGACTAAGCCCAATTTTCATAAGTTTGAACACTCATAAACTCATCTCTTCAAA
ATAATGGCAACTCAAACAATAAAAAAGATATACAGTGTTTTGATGATTGTAGTTTTATTT
ACGATGATGGTTTCAACCAACGCGAGTATGGGATCCTCCCTATAGTGA
GenBank Accession FR800206 [GenBank]
Graphic View Graphic view of gene At5g38378
Predicted Position of Insertion Chr5:15344293 - go to primer design
BLAST e Value 8e-69
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38378 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Plant thionin family protein
Insertion Classification 5' region
Confirmation Status unknown

Gene hit At2g35150

 
Sequence (A. th genome BLAST matches underlined) 
>17-K024346-022-013-A03t-8409
CATTTAAATTGAATATATGCAGTTCGATACGAAAATGTAATTATAGGTTTTCACTTATAA
TGTTAGCTCAACTACTTTTTTAATCTTGACAGTTGGAAATGTCAATGCCATGGAACCCAC
ACTAGTATGAAGCTCAATGATTTCTCTTGTCAAAATAGATTCGTGAAAGCTAATGAATAG
TAGTACAAGGGTAAAATCATAATGGGAGAATCTTTTATAACACCCAATTAGGAGGATTCC
CATAAGTTTCTCTTGTTAACCGAAAACACTGAATTAAACGTTGACATACAGATATTTTTA
CTCTTGTATGTAATATTTACCATCTGCTATTGCCCC
GenBank Accession BX890654 [GenBank]
Graphic View Graphic view of gene At2g35150
Predicted Position of Insertion Chr2:14818492 - go to primer design
BLAST e Value 4e-52
Hit Clone Code (BAC ID) T4C15
Hit Gene Code At2g35150 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation EXORDIUM like 7
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR800232 [GenBank] AL752349 [GenBank] AL752349 [GenBank]


Last Updated on 10.06.2021 13:37