SimpleSearch - Line and FST details


Line specific information

 
Line ID 014B05
Vector Used pAC106
Line Availability available as T3 set from NASC (N401265)
Segregation Analysis 50:45:36
Confirmed for Hit At3g28650
Parent of DUPLO pair none
Parent of pair(s) 7945, 52326, 89272, 89273, 89274, 89275, 89276
Note

Gene hit At3g59280

 
Sequence (A. th genome BLAST matches underlined) 
>34-K025961-022-014-B05-8409
GNAGCCATTTACATTGAATATATCCTGAACACGATGCCGGGTAATGCGAAAGCGGGGAAC
CTTTGACCTGCACTCCAAAGTACATCGAGCCGAAGAATGTCTAGAAGTTGTGTATGGGAT
CCTCCCTATACCGAGCCCCCAGACACGGTGAGCGACGGGGCAACGGAGTGATCCACATGG
GACTTTTAAACATCATCCGTCGGATGGCGTTGCGAGAGAAGCAGTCTATCCGTGAGATCA
GCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAACGCAGGTATGGGAT
CCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GenBank Accession CR395025 [GenBank]
Graphic View Graphic view of gene At3g59280
Predicted Position of Insertion Chr3:21909373 - go to primer design
BLAST e Value 1e-09
Hit Clone Code (BAC ID) F25L23
Hit Gene Code At3g59280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein Transporter, Pam16
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit CR395025 [GenBank]

Gene hit At3g28650

 
Sequence (A. th genome BLAST matches underlined) 
>17-K011903-0022-014-B05-8409
CGTTGAGACCCGACTTTATGAGCATTGATAGCTCACCTTTTCCTTTTATCGAATATTGAG
GGAACTCTCAAGTTTCTCTGTAAACTTTGCTATGGGATCCTCCCTATAGTGAGTCGATAC
ACTCACAACCTTTACAAGTGTAGAACCAAGTCTTTGAATTTGCTTCTCTTTCGCAAATAT
CACACCAATATTTTCCGCTTGCCTTTTCACCATAACAAAGAGTGAGTGGATGATCATCGT
ACCTGGGAAGCCTTACTGTATATGGTAGAGTGGCACAACGAAAATCCAAAAAGTAGTTGC
ATTTTAAACAACCTATGGGATCCTCCCTATAGTGAGTCGA
GenBank Accession FR800350 [GenBank]
Graphic View Graphic view of gene At3g28650
Predicted Position of Insertion Chr3:10737693 - go to primer design
BLAST e Value 8e-101
Hit Clone Code (BAC ID) MZN14
Hit Gene Code At3g28650 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cysteine/Histidine-rich C1 domain family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37