SimpleSearch - Line and FST details


Line specific information

 
Line ID 015H07
Vector Used pAC106
Line Availability available as T3 set from NASC (N401435)
Segregation Analysis 50:49:33
Confirmed for Hit At5g50080
Parent of DUPLO pair none
Parent of pair(s) 1203
Note

Gene hit At2g47680

 
Sequence (A. th genome BLAST matches underlined) 
>56-K019122-022-015-H07-8409
ATTGTCTACAAACATTGCGGAATCTTCGGTAATATCCCCAAAGTAGCATATGTCATTGAC
TCGTGCCGGTCTCTGCAAGTGTTCTGGTTATCCGTCCAGAAAAAGAGACGCAGTACAGCT
TGGTTTGGGTCCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession BX285022 [GenBank]
Graphic View Graphic view of gene At2g47680
Predicted Position of Insertion Chr2:19548938 - go to primer design
BLAST e Value 1e-44
Hit Clone Code (BAC ID) F17A22
Hit Gene Code At2g47680 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation zinc finger (CCCH type) helicase family protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g50080

 
Sequence (A. th genome BLAST matches underlined) 
>56-K013040-022-015-H07-35St
TAGACGAAGGGATGACGCTCAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGATTGTCGAAAATTGTACATTTTGATTGTACTTTCGAAAATGGTT
CGGCTTAAAAACTTTTGGGGCCTTAGGCTTTTGGATGTTTTAATGAGGCTCAAATATTTT
CGACCGTGAGTTTATTTGGGCCCAAATGAACTATCTATGGGATCCTCCCTATAGTGAGTC
GTATTACTCAGTNNNNGNCCCCCCCCCGGCCCTCCCCCTTTTCTCCTCTCTGTCCCCCCT
GCTTGGTTTTTCACCTTTTCCTCTCTCTTTTCCCACTCCCGCCCCCCCCCTGCCCGGCTC
GCTTTTCTTTTTCCCCCCCTCCTTTCTCCTCTTCCCTCCCCCCCTTGTTCCCCCTCCTTC
CACCCAACCTTTGAATCATATCCTTTTCCTCTCGCAACCTTAATCCCCTTTACTCCTTCC
TCATTCTTTCCCACTCGATCCCCCTTCTTCTTCACGCACATCCC
GenBank Accession AL752605 [GenBank]
Graphic View Graphic view of gene At5g50080
Predicted Position of Insertion Chr5:20365534 - go to primer design
BLAST e Value 1e-59
Hit Clone Code (BAC ID) MPF21
Hit Gene Code At5g50080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ethylene response factor 110
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences

Gene hit T14G11

 
Sequence (A. th genome BLAST matches underlined) 
>56-K019208-022-015-H07-8409
AATGCTATGGGATATCTATCAAAATGCTTAAATGGACAATTTTGTTACTGCTATGAGATC
ATCCTCCACTATAGAGAGTACATATTTATTGGAGAACAAAACTCCCATAAATGAGGCATC
AATACATACGTAACACTTGTACTCAAACTCTATAGCTGTGATTTGTTTTTGTTTTTGACA
CCAACTATATATGAATGATGATGGTACAATTCAAAGATTTTCATAATGAATCTATGGGAT
CCTCCNTATAGTGAG
GenBank Accession BX285023 [GenBank]
Graphic View Graphic view of sequence BX285023 of line 015H07
Predicted Position of Insertion Chr2:14423889 - go to primer design
BLAST e Value 7e-83
Hit Clone Code (BAC ID) T14G11
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37