SimpleSearch - Line and FST details


Line specific information

 
Line ID 016D04
Vector Used pAC106
Line Availability available as T3 set from NASC (N401480)
Segregation Analysis 50:49:46
Confirmed for Hit At3g55000
Parent of DUPLO pair none
Parent of pair(s) 12205

Gene hit At3g55000

 
Sequence (A. th genome BLAST matches underlined) 
>41-K032604-022-016-D04C-3144
TCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGAC
AGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTTACTATCTAAATGGCGTACCCAGA
TGTCTTTTTTCTTCAAATAAATGGGCAGGCCGGTTTCTGCATCTCAAGCATCGGGTGAGT
CATCATTTCCCTAGTTTCTTGAAGTATTGGTTGAAATACGTATGCTTCATTATTTTTTGA
TACCAAATAAATATGACAAGATGTTACAGATAGAAGAGCCGGGTTGTCTACATCTGGGTA
CAGAAAAGATGAATTCAACTGGAGACAAGGTAACCAAGATACACATGAAGAGGTAACAAG
AGCTTCAGCGGCGCTGGAAAATCTACAGCTTGATAGGAAAACTCGGAACTTAACATCGTC
TTGGAGGTAAGCTTTCAAGGAAGTCTCATTGAATCCCACATTGAAATGA
GenBank Accession LN713377 [GenBank]
Graphic View Graphic view of gene At3g55000
Predicted Position of Insertion Chr3:20383144 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28P10
Hit Gene Code At3g55000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation tonneau family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL752641 [GenBank]

Gene hit At5g45260

 
Sequence (A. th genome BLAST matches underlined) 
>28-K012439-022-016-D04-8409
TTTGATACCATGTAGACTTTCCCGGACATGAAGACCTTTACACTTGAATATATCCTATAA
ATTACAACGGGCATGAGGGATTCCTGTACTCATATGAACTTGAAATCTAATCAAACGATG
TGGACATATGATTATGCATCTTGCATAAAACAGAGCGGCTAACACCTTGTTCCCATAGGA
TCGACCTAATACTACCTGGCTGTAACGGGTGCCACAAAATGAACATCCTCCATATTGAAC
AAAGACGCTATGTAAAGAAATAGAACTTTATCCGTCTCCTGTAAATCATCATAGCTGACT
CTCAATACTTCATAACCGGAAACCTCTACTGGATCCAAAGACAAAACTATGGGATCCTCC
CTATAGCGAGTCGTATTACTC
GenBank Accession AL752640 [GenBank]
Graphic View Graphic view of gene At5g45260
Predicted Position of Insertion Chr5:18330251 - go to primer design
BLAST e Value 1e-62
Hit Clone Code (BAC ID) K9E15
Hit Gene Code At5g45260 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (TIR-NBS-LRR class)
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit AL752640 [GenBank]


Last Updated on 10.06.2021 13:37