SimpleSearch - Line and FST details


Line specific information

 
Line ID 017F07
Vector Used pAC106
Line Availability available as T3 set from NASC (N401603)
Segregation Analysis 50:41:33
Confirmed for Hit At5g22980
Parent of DUPLO pair none
Parent of pair(s) 3203, 3298
Note

Gene hit At5g22980

 
Sequence (A. th genome BLAST matches underlined) 
>54-K013489-022-017-F07-8409
GCTCAACAATAAGATTTCCGAATTAGAATAATTTGTCTATTGCTTTCGCCTATAAATACG
ACGGATCGTAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAACGCTGCGGAC
ATCTACATTTTTGAATTGAAAAAAAATTGGCAATTCCTCTTTCTTTTTCTCCATATTGAC
CATCATACTCATTTCTTTCATTCAAAATCAGCCAAGCAAAGTTTTAATCTGTTCAAATAA
TGATTTGCTTTAATGGAGATCAATTTAGTACTCAGTACTTAATATAGATAAGTACACGTG
TTTTATTTGATATTGCAGGATGTTCTATTTCTTTTTTGAATCACGGAACAAAACAACCGA
TCCGGTTGTGATCTGGTTAACCGGTGGACCGGGCTGCAGTAGTAGTGTGGCTATGCATTA
TGAAAACGGTCCGTCCAAGATCTTACAGGATTTGTCATCTCTATTGGAACGA
GenBank Accession AL752819 [GenBank]
Graphic View Graphic view of gene At5g22980
Predicted Position of Insertion Chr5:7688401 - go to primer design
BLAST e Value 1e-127
Hit Clone Code (BAC ID) MRN17
Hit Gene Code At5g22980 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation serine carboxypeptidase-like 47
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL752818 [GenBank]

Gene hit At1g14990

 
Sequence (A. th genome BLAST matches underlined) 
>14-K017012-022-017-F07T-8409
TGTCTGTAATTTCCCGGACTGAAGCCTTTACATTGTTATTGCTGGCACCGAACTTTTGAC
CGACACAGCTAAGGTTTGTCCTTGATGACAATTTTGAGTTGTCGTTTACAGTTTATATAG
TTGATTAGTTCTGTGTGGAACTGATGATTGGGGTTTATTGGAGTAAAGCTGTACAAAGCG
GCGCTTGGGAATTGCTATGAATCTGAAGATTGGGGTCCTGTTGAATTCTGCATAATGGCT
AAGCATTTTGATCGCCAGGGAAAATCTCCATACGTTTACCACTCCGTAAGTTTCTTCAAT
CTCTTTATGATAATCTCTGTGGTGCGGATATTTTAGTGTTGTAAAGGTCAGTTTCCATAA
GCCTATGGGATCCTCCCTAATAGTGAGANNCNNNNCNNCNNNTNCTCTTCTTGNTCCCCC
TTGTTTTTCCCCGGTTTTGCTCNAGAACATATGTTTCNATTGTATCCTCTCCCTCATAAA
TAATTTCCTTGATCTCTTCAACACATTTTTTCACCACCGCACTTGAATGTTTCCTTGCAT
TTGCATCTTTCAGAAAAGAGCTTAACATGGTTAGATCCCTTTTTAGTTCAGATACTTGAT
CTTCGACTCCCCGAAATAACCCCATTCTTGACTCAATAGGGTCCACAGGGTTTGGATAAC
CAAACAAAATAAGTCCCCAGCCAAAATGGTTCC
GenBank Accession AL936079 [GenBank]
Graphic View Graphic view of gene At1g14990
Predicted Position of Insertion Chr1:5167831 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T15D22
Hit Gene Code At1g14990 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 017E08
Other FSTs Supporting this Hit AL936078 [GenBank]


Last Updated on 10.06.2021 13:37