SimpleSearch - Line and FST details
Line specific information
| Line ID | 018B01 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401645) |
| Segregation Analysis | 50:32:32 |
| Confirmed for Hit | T14N5 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1201 |
Gene hit At2g23780
| Sequence (A. th genome BLAST matches underlined) | >02-K013490-022-018-B01-8409 TTGATCCATGGTAGATTTCCCGGACCATGAAGCCTTTACAATTGAATATATCCTGCCGCC GCTGCCGCTTTGCACCCGGTGGAGCTCGCCTATGGGATCCTCACCTATAGGGAGAAAAAC AGAGTCTTACTGTTGTGGGGAAAGAAAGTTCCAGGCTATATCTGACTTTTGGTTTTTCTC GTCTTTTTTCCATATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATATCAA TTTCTAAACTGATATTGGGCCTGATTATCTACAACAGCACATTTTGGTAGATAAAATGAT GCCAAAAGCTCGTTTTAAACGTTACCTATGGGATCCTCCCTATAGAAGAGTGNTANTCAT CTAAAAGAGACATATATAATTATCTATGAACATACAAGATCCTTGCTTAGTTACCGACTT CGCATGTTATACGGCCATTTGTTCTTGTAATTTACCACAATGCCAATTACCTATGGCATC CTCCCTTTAGTGAGANATGACAGAACATTTANTTGTTTAGAGGAACATTTTTGCCCTTGG GAATTGGGGTGAAACTTACCGTGAGGCAAAAGTAGGGTTCCTTTTCTTATTGCCTGGTCC CCTTAAAGGATGTGTCTTTAAGGGGTTGAACACCCCATATTTTGGTATTCATTATGCCTG AG |
| GenBank Accession | AL752893 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10124691 - go to primer design |
| BLAST e Value | 1e-47 |
| Hit Clone Code (BAC ID) | F27L4 |
| Hit Gene Code | At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL752893 [GenBank] |
Gene hit F5N5
| Sequence (A. th genome BLAST matches underlined) | >02-K013162-022-018-B01-8409 NTTTGATCCATGTAGATTTCCCCGTACTGAANGCCTTTACAATTGAATGTATGCTGACGG TGCTGTTCCTTTGTACCTCAGGACCATATCGAATGAGAGACAGCTACCTCATACTCATAT ACAATATTCAGAGGTCTTTGCGGAGATATATGTATCCTGTTCATTGGTAACACGTTATAG AGATCTTCTTAGGAAAAGTAACAAAAGAAAAACCTTGTATGTGAGTGGGATCCT |
| GenBank Accession | AL752891 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:8106965 - go to primer design |
| BLAST e Value | 5e-19 |
| Hit Clone Code (BAC ID) | F5N5 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR395230 [GenBank] CR395230 [GenBank] |
Gene hit T14N5
| Sequence (A. th genome BLAST matches underlined) | >45-K119667-0022-018-B01C-8409 CATTTACAATTGTAGGTATGAATAATTTAATTTAACATTCTTATATAGGACTATATGACA AAAAAAAAACATATGATTACATAATCTATATGTGAGGTCAAGCAATTCATTTAAGCTCAC AAATAAATGGGATTTTCTTAGTCACTCACTAATCGAGAAATTTAAAATATCTAAAAGTGT GCAAACATGAATGTACATACTTGTGTAAGGCAAAATTTAAGGTACAAACATTGTTTGTGT AGGGGTTACGGGTTAGGTGGGTGCCAATTAATAATTAGAG |
| GenBank Accession | LN713378 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29008746 - go to primer design |
| BLAST e Value | 8e-129 |
| Hit Clone Code (BAC ID) | T14N5 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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