SimpleSearch - Line and FST details


Line specific information

 
Line ID 018C04
Vector Used pAC106
Line Availability available as T3 set from NASC (N401660)
Segregation Analysis 50:46:28
Confirmed for Hit At5g45050
Parent of DUPLO pair none
Parent of pair(s) 12205
Note

Gene hit At2g23780

 
Sequence (A. th genome BLAST matches underlined) 
>27-K013490-022-018-C04-8409
CTGATCCATGGTAGATTTCCCGGACATGAACGCCCTTACAATTGAATATATCCTGTAGAT
CCCTAAAAAGTAGAGATTTGGACGAAACAAAAGAGGAAACCAGACATCTTGGGAAAAAAC
AGAGTCTTACTGTTGTTGGGAAAGAAAGTTCCAGGCTATATTTGACTTTTGGTTTTTCTC
GTTTTTTTTCCATATATTTTCTTTGGAAGTTTTGATTAATTATTGGGCCGATTATATTAA
TTTCTAAACTGATATTGGGCCTGATTAGCTACAACAACACATTTTGGTAGATAAAGTGAT
GCCAAAAGCTCGTTTTAAACGTAACCTATGGGATCCTC
GenBank Accession AL752910 [GenBank]
Graphic View Graphic view of gene At2g23780
Predicted Position of Insertion Chr2:10124536 - go to primer design
BLAST e Value 1e-53
Hit Clone Code (BAC ID) F27L4
Hit Gene Code At2g23780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status failed
Other FSTs Supporting this Hit AL752909 [GenBank]

Gene hit At5g45050

 
Sequence (A. th genome BLAST matches underlined) 
>27-K026161-022-018-C04-8409
TGAGGTAGATTGATCTCCAAGGCTGTATGGGATCCTCCCTAATGAGAGATAACGGCGATT
AACGCGTATTTGAGATTGCTTACCTTGTTTCCCCCCCAAAGTTTCTTAAGTTGGCTGTAT
GGGATCCTCCCTATACTGTAAAACATCATCCGTCGGATGGCGTTGCGAGAGAAGCAGTCG
ATCCGTGAGATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTATTTGAAC
GCAGGTATGGGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GenBank Accession CR395250 [GenBank]
Graphic View Graphic view of gene At5g45050
Predicted Position of Insertion Chr5:18179605 - go to primer design
BLAST e Value 2e-11
Hit Clone Code (BAC ID) K21C13
Hit Gene Code At5g45050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (TIR-NBS-LRR class)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR395250 [GenBank]


Last Updated on 10.06.2021 13:37