SimpleSearch - Line and FST details
Line specific information
| Line ID | 031A11 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N402891) |
| Segregation Analysis | 50:41:33 |
| Confirmed for Hit | At2g46790 At2g23070 At2g02610 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4267, 9945, 77395, 77414, 77432 |
| Note |
Gene hit At2g46790
| Sequence (A. th genome BLAST matches underlined) | >57-K014871-022-031-A08-8409 AAACTAGGAAGAAAAAGTCGAGAGAAAAAACGCTGGGGATAATATCGAGAAAGAGATCCG GCGTGCCGGTGCGCCGTCGAAAGCTATGGGATCCTCCCTATAGTGAGANGANNACNANNG NGCNNNNCNNCNTTNNANTNNAANCCAAAAAAAAAGTGCATTGATGAAAGATACGGTTGA ATAGGAAAGACAAAGGCTTTGACAGAAAAGGAAAAGACACACATGCTTGATGATAAACAA CAGCACTGTGAAACAAATACAAGATGAAGACTGATTCAATGGAGATGTATAAAAATGGAT TACAGGGGTCGGTACAAAAGAAGGAAGAAGCTATGGGATCCGTCCAAAAGGGAGGAGTAC GCGATGGGGCGATAGCCGGAAGAAGAACGACGGACGGGGGGAATTAAGAGCCGGGAGGAG AGGAGAAAAATTGACGGGGGAGGATGCGCCGCAGATAAAGGACGTGATGAGAAACCGCAC ACCAGAAGAGGAGAGAGAAAACCGGGGAAAAGTCGGGCAGAAAAACGAAAAAAGGCGGCG CGGGAGGGGGGGGCGCATGAAAAAGCAAAGAAGGGACAATAGGAACATGAAAAAAGAACC AAGAACAAGAAGATGTAAAGTAACGAAAGAAGAAGTAAAACGACAAACGACGAAAATANG TTTTGATCCAAGAAAATGCAACAAAACACA |
| GenBank Accession | CT025979 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19234502 - go to primer design |
| BLAST e Value | 8e-24 |
| Hit Clone Code (BAC ID) | F19D11 |
| Hit Gene Code | At2g46790 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | pseudo-response regulator 9 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR800822 [GenBank] |
Gene hit At2g23070
| Sequence (A. th genome BLAST matches underlined) | >81-K113047-0022-031-A11-8409 ATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTC TTTTTCTCCATATTGACCATCATACTCATTGCTTCTGTAAGCAAATTTTTCGGTCCTCAG TAACTAATAAAACGCAAGATTCACCCATACCGGTAGAATTAAATCGCGAGAAAGCCGCTA CATGCCAAGACGCTAAATCTGTCCTGCGTGCCGGTGCGCCGTAGAAAGCTA |
| GenBank Accession | FR800822 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:9826886 - go to primer design |
| BLAST e Value | 3e-05 |
| Hit Clone Code (BAC ID) | F21P24 |
| Hit Gene Code | At2g23070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CT025979 [GenBank] FR800822 [GenBank] |
Gene hit At2g46670
| Sequence (A. th genome BLAST matches underlined) | >81-K113047-0022-031-A11-8409 ATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTC TTTTTCTCCATATTGACCATCATACTCATTGCTTCTGTAAGCAAATTTTTCGGTCCTCAG TAACTAATAAAACGCAAGATTCACCCATACCGGTAGAATTAAATCGCGAGAAAGCCGCTA CATGCCAAGACGCTAAATCTGTCCTGCGTGCCGGTGCGCCGTAGAAAGCTA |
| GenBank Accession | FR800822 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:19165227 - go to primer design |
| BLAST e Value | 8e-15 |
| Hit Clone Code (BAC ID) | T3A4 |
| Hit Gene Code | At2g46670 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CCT motif family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
| Other FSTs Supporting this Hit | FR800822 [GenBank] |
Gene hit At2g02610
| Sequence (A. th genome BLAST matches underlined) | >57-K014862-022-031-A08-8409 TTTTGATCCATGTCAGATTCCCCGGACATGAAGCCATTTGAGAACGCTATATGCGTCAAT TATGAAGACCTTGTCGTAATCAGAAACGCTGGCTCAGAAGATCGGTAAATCTATCCGGCG TGCCGGTGCGCCGTCGAAAGCTCTACTTCGAACCCGTTATGATTTAATTATATAGATGAT GAGGTGGAAGATGAGGCAACTAATTATATCCTTTCAAATACAGTTCTTACCCTCTCTTTG AGGAAACCAGCTACAATCATCATGTACTACCTCTGGTTTGGCGCAACAACAAATAATTTG ATCCAGAAGCAGGATAAGGCGATGAGTGCTATTCCTGCTCTATACAGACCATCGGTTCAG ACTTTTATGCTTGCGCCACGTGTGATGAAAGGTTCCCAACGAATGAATTGAGTGNCCACT TGAGATTAGTTATCCTACCCACACCAAACATTCTCTCCAACTCTTCTATTCTAAATATAG ATTTGACCATTGCATTTACTGGTGAAAAAGAGCAACCTATATGAGTTATTTTTGTGCTCT TTGCGACGGAATATGCTTTCTTTTGGTGCTCAGTCAAAAATACCCTTTTTTATAGACCAA CCCAAAAGACATGACCCTACTCTCACCCTTTTCCCTA |
| GenBank Accession | AL762959 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:710807 - go to primer design |
| BLAST e Value | 4e-152 |
| Hit Clone Code (BAC ID) | T8K22 |
| Hit Gene Code | At2g02610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cysteine/Histidine-rich C1 domain family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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