SimpleSearch - Line and FST details


Line specific information

 
Line ID 031A11
Vector Used pAC106
Line Availability available as T3 set from NASC (N402891)
Segregation Analysis 50:41:33
Confirmed for Hit At2g02610
Parent of DUPLO pair none
Parent of pair(s) 4267, 9945, 77395, 77414, 77432
Note

Gene hit At2g46670

 
Sequence (A. th genome BLAST matches underlined) 
>81-K113047-0022-031-A11-8409
ATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTC
TTTTTCTCCATATTGACCATCATACTCATTGCTTCTGTAAGCAAATTTTTCGGTCCTCAG
TAACTAATAAAACGCAAGATTCACCCATACCGGTAGAATTAAATCGCGAGAAAGCCGCTA
CATGCCAAGACGCTAAATCTGTCCTGCGTGCCGGTGCGCCGTAGAAAGCTA
GenBank Accession FR800822 [GenBank]
Graphic View Graphic view of gene At2g46670
Predicted Position of Insertion Chr2:19165227 - go to primer design
BLAST e Value 8e-15
Hit Clone Code (BAC ID) T3A4
Hit Gene Code At2g46670 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation CCT motif family protein
Insertion Classification CDSi
Confirmation Status failed
Other FSTs Supporting this Hit FR800822 [GenBank]

Gene hit At2g02610

 
Sequence (A. th genome BLAST matches underlined) 
>57-K014862-022-031-A08-8409
TTTTGATCCATGTCAGATTCCCCGGACATGAAGCCATTTGAGAACGCTATATGCGTCAAT
TATGAAGACCTTGTCGTAATCAGAAACGCTGGCTCAGAAGATCGGTAAATCTATCCGGCG
TGCCGGTGCGCCGTCGAAAGCTCTACTTCGAACCCGTTATGATTTAATTATATAGATGAT
GAGGTGGAAGATGAGGCAACTAATTATATCCTTTCAAATACAGTTCTTACCCTCTCTTTG
AGGAAACCAGCTACAATCATCATGTACTACCTCTGGTTTGGCGCAACAACAAATAATTTG
ATCCAGAAGCAGGATAAGGCGATGAGTGCTATTCCTGCTCTATACAGACCATCGGTTCAG
ACTTTTATGCTTGCGCCACGTGTGATGAAAGGTTCCCAACGAATGAATTGAGTGNCCACT
TGAGATTAGTTATCCTACCCACACCAAACATTCTCTCCAACTCTTCTATTCTAAATATAG
ATTTGACCATTGCATTTACTGGTGAAAAAGAGCAACCTATATGAGTTATTTTTGTGCTCT
TTGCGACGGAATATGCTTTCTTTTGGTGCTCAGTCAAAAATACCCTTTTTTATAGACCAA
CCCAAAAGACATGACCCTACTCTCACCCTTTTCCCTA
GenBank Accession AL762959 [GenBank]
Graphic View Graphic view of gene At2g02610
Predicted Position of Insertion Chr2:710807 - go to primer design
BLAST e Value 4e-152
Hit Clone Code (BAC ID) T8K22
Hit Gene Code At2g02610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cysteine/Histidine-rich C1 domain family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37