SimpleSearch - Line and FST details


Line specific information

 
Line ID 039E12
Vector Used pAC161
Line Availability available as T3 set from NASC (N403708)
Segregation Analysis 50:41:25
Confirmed for Hit At3g48870
Parent of DUPLO pair none
Parent of pair(s) 61991
Note

Gene hit At4g31840

 
Sequence (A. th genome BLAST matches underlined) 
>93-K030268-022-039-E12-8409
ATTTGGTCTTGTTATGGGATGACGGGCCTTCTTCTTTTAGAAATAATTAATCTTACTTCT
AGTGAGTAGTTTTGAAATATATGGGACAGATCTTTGTTATTTACTACATTAGATTTGTTT
TGATCGAAATTGTTCTTCCGCATTTGGGGTTCTGGATAAATTAGT
GenBank Accession FR801106 [GenBank]
Graphic View Graphic view of gene At4g31840
Predicted Position of Insertion Chr4:15402183 - go to primer design
BLAST e Value 4e-15
Hit Clone Code (BAC ID) F11C18
Hit Gene Code At4g31840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation early nodulin-like protein 15
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 164H12

Gene hit F18F4

 
Sequence (A. th genome BLAST matches underlined) 
>93-K015216-022-039-E12-8409
CTGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAATTGACAGCAATGTTACATGG
TAAAGAAGACGAAGTATTGACTCAGCTTCATGTGTTTGATCCTATGGGATCCTCCCTATA
GTGAG
GenBank Accession AL763705 [GenBank]
Graphic View Graphic view of sequence AL763705 of line 039E12
Predicted Position of Insertion Chr4:10829545 - go to primer design
BLAST e Value 2e-18
Hit Clone Code (BAC ID) F18F4
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g48870

 
Sequence (A. th genome BLAST matches underlined) 
>93-K015224-022-039-E12-8409
NTTTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCATCAT
ACTCATGCTCAGGTTTAATATTTGCATGTATCTCAACTACCAAAGAACTATGTGTGTTTA
TATCTACTTGAGCTGATTCAGAGAAAGTTTCGTTTGCTTAGCTTCCTGAGGAAGCTATGG
GATCCTCCCATNAGTGAGANNACCTGATGTACTGATGTGACAATTGTGCAGCAGCAACCA
AGGCTTCATCAGTGTATCGAAGTTTGTGGTGGATCTCATAGCGCTCACGCAGACCTTGCA
AAATCTGTATAGCTTCTTCTACAGTTGGTTCAGGTACTTTCACAGGCTGGAACCGTCTCT
CCAATGCAGGATCTTTCTCAATGTGTTTCCTGTACTCATCAATTGTTGTTGCACCAATAC
ACTACAACCGTAAAAAAAGAAAAAAAAAACATTTGGAAAATCTGGAGTTAACGGTCCTAA
TGGACATTTCGACAGCATTAAACGGATAAAAAAAAT
GenBank Accession AL763706 [GenBank]
Graphic View Graphic view of gene At3g48870
Predicted Position of Insertion Chr3:18123851 - go to primer design
BLAST e Value 4e-127
Hit Clone Code (BAC ID) T21J18
Hit Gene Code At3g48870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Clp ATPase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL763706 [GenBank]


Last Updated on 10.06.2021 13:37