SimpleSearch - Line and FST details
Line specific information
| Line ID | 041A04 |
| Vector Used | pAC161 |
| Line Availability | line died - no seeds available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2985, 2992 |
| Note |
Gene hit At5g61480
| Sequence (A. th genome BLAST matches underlined) | >25-K015226-022-041-A04-8409 TGGGATCCTCCCTATAGTGAGCCTTTCTGGGACTCTGAATACGTGGTGGGAACGTCTTCT TTTTCCACGATGCTCCTCGTGGGTGGGGGAACATGTGAAGCTCTGCGATCCTCCGTATGC TGAGAAAATCGAGAAGCTTGAGGGATTTCAAGTTGCTATAACTCTCTGGGATTTCACCGG TGAAACCGTTTTGGAATACAAATAAAGTCTCTATGGGATCCTCCCTATAGC |
| GenBank Accession | FR801171 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:24726688 - go to primer design |
| BLAST e Value | 1e-40 |
| Hit Clone Code (BAC ID) | MCI2 |
| Hit Gene Code | At5g61480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g18290
| Sequence (A. th genome BLAST matches underlined) | >25-K015219-022-041-A04-8409 NTGATCCATGTAGCATTTTCCCGGACATGAAGATCTCGTGTGTGCCTGGTGGCTCTTGTG TACTTGTGAGATAGACGTCATATTTTACGGGAATGGACAGACTATATGGGATGTCTCCTA TGAGAGTATGCTCTACTATAGATGAGAGGAATCCTGCCTTTTGTGTGTTTCCGGAATTTT TCTTATTTTCGTGCGAGCAAGAACGTTTTCGCGAGCATTTTTCGAGGACCTTTTAGGATA ATTAGTAAACCAAGAATGTAACACTAAAACTTAGGACCACTTCAAAAATAGCTCCATTGT GTGCACCAAATTGCAATGAAGGCTTTCCTCCAATCCTATGGGATCCTCCCTATAGTGAGC TAAACTTGACTAAATGCCTAACCCGAAAACACTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | FR801170 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:6055390 - go to primer design |
| BLAST e Value | 2e-64 |
| Hit Clone Code (BAC ID) | MRG7 |
| Hit Gene Code | At5g18290 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Aquaporin-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g11360
| Sequence (A. th genome BLAST matches underlined) | >25-K030575-022-041-A04-8409 GGAAGCAGCCTTTACATTGAAATATCCTGTCGCAGTGGGATCCAAATAACGAAGAGTCGC AGAGGAAGCTTGAGGACGATTTCGACATTGTCACTAATAAGAAAGCGAGCGACGTTGCTC AGCCTTTGGTTGAGGCGGATATTCCGTTTAAGATCCATATCGTCAAGGATCACGATATGA AGGAGAGGCTTTGTTTGGAGGTGGAGAGGTTAGGGCTAAGTATGGGATCCTCCCTATAGT GAGTCGTATTACTCACGTTCGTTTAAATGTTCCCATTGGTACATTCCCACCTGAGAGAAA GAGTTGAGGAGTTTGANANAGCTTCTCCAAACTCGCTAAATACCAACAGCAGCCACACGA ATTATTTGGCCCATTTGCCACGTCACAGGAGTTACGCGAAGTCGTCCCGGTGGCCGGGGC GGCTGAANAAAGAGCCCGAATAAAGTCAAGGCTTGGTAAGCGGNAAGAGGGGNGGGAGAC GNTCAGGGTCAGGACAAGAGCAAGGAAGACCGAAGCAAGAAAGGGGGAGGAACCGGAAAA GGAACA |
| GenBank Accession | FR801172 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3822628 - go to primer design |
| BLAST e Value | 1e-104 |
| Hit Clone Code (BAC ID) | T23J18 |
| Hit Gene Code | At1g11360 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Adenine nucleotide alpha hydrolases-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 169C08 |
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Last Updated on 10.06.2021 13:37 |
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