SimpleSearch - Line and FST details
Line specific information
| Line ID | 041D01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403877) |
| Segregation Analysis | 50:49:35 |
| Confirmed for Hit | At1g23830 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 9612, 11133 |
Gene hit F26B15
| Sequence (A. th genome BLAST matches underlined) | >04-K015226-022-041-D01-8409 NTGATCCATGTAGAATTTCCCGGACATGTAGCTATCTTGATAAATGTAAAAGAACTTGAT CTTAAAAGTTTATGATATCTTGAATGTAACATGCAACAATGAATTGGCAACGACGCCAAA GTGATAAGCAGGTTTTTTCGGCCTACTTATGTTGAATGTGTGTGTGATTCAGTTTAATTC CCCTAAACACACAAACATGTCAATGCAGCTATAGTGGGTGTCAATCCAGTCCACTATATT GCTATGGGATCCTCCCTATAGTGAGAGGCAAANGGAAAGAGAATTTACCATAATCTTTTA CATTCTAAAGGTCTGAGGGTCCGCCCAGTGATGAGATGCAAACATGTGATCANACAACCT TCTACTATAGACGGACTTATTGTGATAGAGCTCTCTAACTTATAAAGTAGACCTAACGGC CTCTTCTTGTATGTGTAAACAATATAAGATGCTATACCAATGTGTGGTGCTTGGAACAAA GATAAGACTGTGTTACGGGAAGAACTACAACATAAGTGTGTGGACCAACCATGATATCAG ATCATTCTATCTCTCATATATGAAAATCATATCATATCCCGGCAAGTGTTCTCCCATACC GTTTACAATTCCCTTGACACTTGGAAGCGATATTGACGGAAGGATTGCAAGCCAACCCCA NCTAAAATGAATCAAAAACCCCC |
| GenBank Accession | AL763828 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14391655 - go to primer design |
| BLAST e Value | 4e-112 |
| Hit Clone Code (BAC ID) | F26B15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g23830
| Sequence (A. th genome BLAST matches underlined) | >04-K015219-022-041-D01-8409 NTGATCCATGTAGATTGTCCCGGACCATGAAGCACTTACAAAAAAACATTCATACTCAAA CCCATGAGAAAAGGACTTGAGAAGCGTGACCTATGGGATCCTCCCTATAGTGAGATCCAC TTACTATACTTTGCAGTCAGAACTATAAATAGAGTACATTGCATCAGAAGAGTCAGAGGC ACTACCACGTTGAATAGACCCGTTGGTTGGTAGTGGAACCCTTTGTATTCGCGTGAGAGA TAAGGAATGGATACGTAGTTGGTTGAACCAGAGAGAAACTGAAGAAAAAAGAGCATGAAA AAGAATAGAGAAACTGAGAGAAAGATCAATAGATCTCCTTTGATCGCCTTTGTCATTTGC GCTATCTAATGAGTGAAAATTAACGTAACTTATTAATTGTAAAACTCTTTTCGAAATTAA TCATAATACATAATAATACATACTCTATATTCCTCTATTATCTAACTCCTGTAAATTTAT ATAACTGTTTTTGAATGAATATGTAAAAATTTGGAAAGAAGCTGTTTGATTATTGACCTT AAAGGCCCTGGGAACCTATGTATCCCTACCTTAGGGGAGAGGCCCCCCCNCCNCGCCGCT TTTCTCATCCTCCATCCCCGCTCCAAACCGCCCTCTCGCGTCCACCGTCCCGCGGGCCCC CCCCCCTTCCACGTCCCCGCCACCCCGCCGCCGCCCCTCACCCCCCGCCTCTCCCATATT CCGGNCGCGTCGGGCCGCCCGACGGCGCCGTCCCAACCCCCCCCCCCGGTGTTCCCCGCC CCCCCACCCCCGGGTCTGCCCCCCGGGATCCCCCTTCCCCCCTCGTTTTTTGCCCCCGCC GCCCTCATTCTTAACGCCCCGTTCCCATTCGCCCCCCGTTTCCTAACGCCCAGTGGCCCA TTTATC |
| GenBank Accession | AL763827 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:8423305 - go to primer design |
| BLAST e Value | 1e-81 |
| Hit Clone Code (BAC ID) | F5O8 |
| Hit Gene Code | At1g23830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g21120
| Sequence (A. th genome BLAST matches underlined) | >04-K030576-022-041-D01-8409 TTTAGACCGAATGGGGGAAACGACGATCTGATCCCCGGGTAGGGGATCCTCCCTTATTTT GAGATCAATGACTCAAGTAGGAAGATAGGGAAAATACGTTTAAGCAGGCTAAGAGTCTCT TAGCTGGTTAAATTTAGTTTTAATTACGATTTACATGTTTAAACGAAACGCATATTTGAG GATATCTTTTCTAGCGATATTCTAACTATAGTGTCATCATAATTAGGGAATAGAAAAATG TAGCGTATGGGATCCTCCCTATAGTGAGTCNTATTACTCA |
| GenBank Accession | CT026015 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:11270922 - go to primer design |
| BLAST e Value | 3e-93 |
| Hit Clone Code (BAC ID) | F7J7 |
| Hit Gene Code | At4g21120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | amino acid transporter 1 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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