SimpleSearch - Line and FST details
Line specific information
| Line ID | 044C07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404159) |
| Segregation Analysis | 100:100:78 |
| Confirmed for Hit | At1g77145 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12537 |
| Note | |
Gene hit At1g09770
| Sequence (A. th genome BLAST matches underlined) | >51-K015474-022-044-C07-8409 TGATCCATGTATCGCTATGGGAATATGTTGGCAATGGTTGAAAAAGAGAGGAGATAATGG TCGGTTTCCGACACAGGCATTGAAGAAACAAGAGGATGTTGAAGATTCTCACGAACTGAA AGAAGCTAAGCTATGGGATCCTCCCTATAGTGAGAANCAANAGGATGGTGA |
| GenBank Accession | AL763946 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3164948 - go to primer design |
| BLAST e Value | 7e-52 |
| Hit Clone Code (BAC ID) | F21M12 |
| Hit Gene Code | At1g09770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cell division cycle 5 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 278B09 |
Gene hit At1g65620
| Sequence (A. th genome BLAST matches underlined) | >51-K015601-022-044-C07-8409 AAATTTGATCCATGATAGCTTTCCTTGGACATGAAGCCTTTACAATTGAATATATCCTGA CAAATCACCAGAGAAAGTTAGCTTCTTTTACCCTTTCTCTTACCAATTTTGGATTTTTCG AAATTGGGTTTTTGATTAGATCATTAGACTCTGTTATAGGGTTTGTCTGGAAGCTTCTGG TCCCTATGGGATCCTCCCATCAGTGAGAAAAATTCGTTTTTGTTCACAAAGTGTTTGGAG CAAGTAACGCGACAAAGCTCCTCAACGAGCTTCACCCTTCACAACGTGAAGACGCAGTGA ACTCTTTGGCCTATGAAGCCGACATGCGCCTCCGTGACCCTGTCTACGGCTGCGTCGGCG TCATCTCTCTCCTCCAACATCAGCTTCGTCAGCTTCAGATAGATCTCAGCTGTGCTAAAT CTGAGCTCTCTAAGTACCAAAGCCTCGGTATCCTCGCCGCCACTCATCAGAGTCTTGGCA TCAACTTACTCGCCGGAGCAGCAGATGGAACAGCCACCGCCGTGAGAGACCACTATCACC ACCACCAGTTTTTTCCTATGGGATCCTC |
| GenBank Accession | AL763947 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:24400103 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F5I14 |
| Hit Gene Code | At1g65620 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Lateral organ boundaries (LOB) domain family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 283F11 |
Gene hit At1g77145
| Sequence (A. th genome BLAST matches underlined) | >32-011521-rosso-C7-35St TGGCGTAAGGGATGACGCACAATCCACTATCCTTCGCAAGACCCTTCCTCTATATAAGGA AGTTCATTTCATTGGGATATATCCTTGCAGGCGGAGATTCGATTGTCGTTTCCCGCCTTC GGGGGATACTTTCTTTGTGTGAAGCCATGTGTATGAGTACATTGACGTCATGGTGAAGGG TGATAGCAACCGTGATGGCGTAAGCAAGCTGAAACGTGTGATAATTGATCTTGACTTAAA AACTCAGTTTGAGCTATGGGATCTATACTTTACGGTTGACAATCCTCCTCCTCCACTACA ATTCTTTATATAAGATAATATATTGAAGATAACTCCGCCTCACTACACCTCCCACCACTC GCACCCCCCTCCTCGTCCCAGATGATATCATTAATATAGTTATGCAGATAAAAAATGCGC GTCATGTCTATAACCGAATTAGACTCATGTCACTCTCACGAACACAACTCACTTCTCTTC TATTATGAGTGTCCGCTTGTCTATATGGCTCAAGTGCGAAATACTCTTCTTTACAAAACA ACGTTATGTTGTTTTCCTCCTGTATATAACATACACCAACCTCATCGCTCAATTAAAAAC AGCAATTACACCCCTCGGCAGATAAATATAAACTACTGCTCCCCTACCTTATTCTCGTTA TCTACCATCACTTGCGCGCTATCATCGGACTCCTATATCAAATTCAGTCATATACCGTAT ACTTTATTAGCTCACCTTCTCCTTTTCTCTGTTTCATCATCTCCTACCCTCGCCACCTTC TCTTTTTCTTATTCTTTCACCTATCAATTGCTATACTCGTCTCACCTGTCCTACTCCCAT TATCTACAATTAACCAGCTATCAGCTCGACACAAAGTACTATGGAGGTGTACAATCCGGT GACAGACATCTGTACTATTACCCCATGTATATTGTCAGCGTGATGCGTCCGCCCCGCGGA CACGGGTACTACAGCACTCATACATACCTACGAGTACTGCACTTCTGTGCTGACTCTCTT CCTCCCTTCATACCAGCTAATCAAGCAATA |
| GenBank Accession | AL763945 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:28990616 - go to primer design |
| BLAST e Value | 1e-50 |
| Hit Clone Code (BAC ID) | T14N5 |
| Hit Gene Code | At1g77145 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein, putative (DUF506) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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