SimpleSearch - Line and FST details
Line specific information
| Line ID | 046C05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404349) |
| Segregation Analysis | 50:43:38 |
| Confirmed for Hit | F4I1 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12729 |
Gene hit F4I1
| Sequence (A. th genome BLAST matches underlined) | >35-K016075-022-046-C05-8409 TTTCTCTTTTATATGTTCGTGTTACTTTATTTATTTTTATTCTTACTCTGAACAGAAATA CAAGGTAAAAGTCGTGAGGATTTACCTATATATAATGGGCTCCCCAATATTAATAAATAA ACCATTAGAGTGGTAATTGACCGACACTTGGTTTGCCCTGCTATGGGANCTCCNCTATTA TGAGAAGTGAGNAAANAGNNGGNTTTGNCTTTTTTTTTTCTTTTCCATGATATGGGATAC ATCAAGAAATAGTAGACTCCGAAACACTATCCACGTTTTTTCTATGGGATCCTCTCGATA GTGAAGAAAAAAAAGAAAGAGTACTTACCTTTTTTTTTTCTATTCAATAATGTTTATGCC CCCCCTTTTATAATAAGGTCCCCTGTGTTTCAGTTTCAAGAA |
| GenBank Accession | AL936158 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:18359024 - go to primer design |
| BLAST e Value | 1e-81 |
| Hit Clone Code (BAC ID) | F4I1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g23150
| Sequence (A. th genome BLAST matches underlined) | >35-K016080-022-046-C05-8409 TGTCATGAAATTTCCCGGACATGAAGCCTTTACACTGACTTATCCTATACTTACACGCGA GATGAATACAATGTGATAGAGCCTACGATTATCCTTTATCTATGATGAATTCACCAATAT TACTAACATAAACTCTTTAGAGATAATAATGAGGAGCGACACATCGGTATGTCTGACAAC TGGACACCACCCTCATGGTGAGAAGACTCACTCCAATGTCTGGGATACCTCCCTAGAACG TGATACGGCCTCCATACTACCAAGGTCTCGATACATGGACAATAGACGCTACCGACAATA AGCCGTTCCGCTCTATTGCTCTTCTGCCCGATATATGACCAAGACCAGCATGTTCATCCA CGATGGAATGGAATATCACCCCACTCTTGCGTATATACACCTCATAAGATCCAGTCACAA ACATGCACGGGAGACGCTATACTCTTCTCTACTGGCAAACGTATACAAACCCTGCAGCAC CACTGTCACTACTAACTAACAAGCACTATGCCATCCACTCATNAGGAGCGAGTAAAAAAC AATACAACAATGCTTGTGAATTTTTTACTTCCCTGAAATGCTAATAAATACGGTATTATT AGCATTTCAGGGAAGGAAGTGAAAATTTGAGAACAGGTATTGCATCTATCCAAGAGGAAA GCTCACCTTTTTGGCTGTGCGAATGCTGGGGCGATANAATCCACCAGAAAGACAAGTCCA CTTTACGATGGAAGTGAGAATCCCTTTCCACCTTTCGGATGAGAAGGTTCACCACC |
| GenBank Accession | AL936159 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:7790255 - go to primer design |
| BLAST e Value | 5e-102 |
| Hit Clone Code (BAC ID) | MYJ24 |
| Hit Gene Code | At5g23150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tudor/PWWP/MBT domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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