SimpleSearch - Line and FST details


Line specific information

 
Line ID 046G09
Vector Used pAC161
Line Availability not available
Segregation Analysis unknown
Parent of DUPLO pair 12705
Parent of pair(s) none
Note

Gene hit T14K23

 
Sequence (A. th genome BLAST matches underlined) 
>71-K016075-022-046-G09-8409
TTTCCCGGACATGAAGCATTATATTGAATGAAACATACCTTTTGATAAGAATGAAAGACG
AATCATTCTTGAGGAGATTTCACGATGATATTCTGAAAAACTTCTTTGAAAACAACATTT
GTTGTTTGCTTTTGAATCTTCCCTGCTTTATCTATGGGATCCTCCCTATAGTGAGATGAA
TCCAACCTATTCTACAAATGAACTGCGACACTCACTCCCTTCTCCAAAACAGATCTGTAC
ACCGAAGACTACACTTAGATTTATTGCATCCCTCGATAAAATATCGGAATTAAATCCAAA
AAACACGGCCGATGGCCACAGACCCTACTAAACTAAAGAATCCGATAAATTCTACAAATA
ATCTCCTCT
GenBank Accession AL936214 [GenBank]
Graphic View Graphic view of sequence AL936214 of line 046G09
Predicted Position of Insertion Chr3:14533861 - go to primer design
BLAST e Value 5e-62
Hit Clone Code (BAC ID) T14K23
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g13340

 
Sequence (A. th genome BLAST matches underlined) 
>71-K016080-022-046-G09-8409
ATTTCCGTGGTTTTTGTATTCGAACAGAATCGATCACATACGTCCAAATTTTGATTTGTG
GACGCCCTAAAGCACTCATGGTATCATTATGAATATACAAACCAAAACTGTGGAAGCCTA
TGGGATCCTCCCTATAGTGAGANCTGACTTGAGCACTATGGTATCCTCCCTATAGTGAGA
GAAACGCGCGCGGATTGCTCTATGATTCTTCTATTCATGTCCAGAACAGTATTCAATTTA
GATAAGGAAACAAAGAGGTTGATCAACAATCACAGACGCGATAATTCAAGAAATGTATTT
TTGCCCTTTCGTGCATGTCAACTTGCTCACTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL936215 [GenBank]
Graphic View Graphic view of gene At5g13340
Predicted Position of Insertion Chr5:4278473 - go to primer design
BLAST e Value 5e-59
Hit Clone Code (BAC ID) T31B5
Hit Gene Code At5g13340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation arginine/glutamate-rich 1 protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37