SimpleSearch - Line and FST details


Line specific information

 
Line ID 049C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N404634)
Segregation Analysis N/A (line seemingly not resistant, T2 plants grown without drug)
Confirmed for Hit At2g18790
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At2g18790

 
Sequence (A. th genome BLAST matches underlined) 
>11-K013871-022-049-C02-8409
CAGAGAAACGCGTTTGGAGAACGCACGACACTGTTATGAGAATGCTTCTGCGTGACTCCC
TGCTGGAATTGAACCCAGAGTGCCCAAACTATGGACTGATTGAAGTAGACGGCTCAGCTT
TTCTTCACCACGGAAAGTATTACCCAGGGGTGTTGCTGTATGGATCCATCGTATAGGGGG
ACATTTGTTTCCCGGGAAGTATACCCGTGGGTGTCGCTCTATGGGATCCTCCTATA
GenBank Accession AL764104 [GenBank]
Graphic View Graphic view of gene At2g18790
Predicted Position of Insertion Chr2:8141365 - go to primer design
BLAST e Value 3e-14
Hit Clone Code (BAC ID) MSF3
Hit Gene Code At2g18790 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phytochrome B
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g41820

 
Sequence (A. th genome BLAST matches underlined) 
>11-K013870-022-049-C02-8409
TATGGTGAGATCGGAAGGAAGAGCACTCTTAGCTTTTTTTGAATTAGCAAGGAAGAGGAT
GCTTGGCTTTCTTCACTTTGTTGTATGCGTTGAGAATCATAAGAAGCTCATCCTTTAACT
GTTCATTTGAGGATAGACTCTCCTTCCGGTTTTGCTTCGTGGGCTTAACTTTTTTCACAT
CATGACAGAGGTTGCCTATGGGATGCTCCCTATA
GenBank Accession AL764103 [GenBank]
Graphic View Graphic view of gene At1g41820
Predicted Position of Insertion Chr1:15583661 - go to primer design
BLAST e Value 1e-56
Hit Clone Code (BAC ID) T4I21
Hit Gene Code At1g41820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 048C12


Last Updated on 10.06.2021 13:37