SimpleSearch - Line and FST details


Line specific information

 
Line ID 052B10
Vector Used pAC161
Line Availability available as T3 set from NASC (N404918)
Segregation Analysis 50:49:36
Confirmed for Hit At3g16980
Parent of DUPLO pair 1564
Parent of pair(s) none

Gene hit At1g51660

 
Sequence (A. th genome BLAST matches underlined) 
>74-K012491-022-052-B10-35St
TTGACGAAGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGGCGTGCTTGAAAGTGATCCTCACGCGCTTTACACATCGCGTAGA
TACCTTTTTCTCGATTTTAACAATTTTGCTATTTATTTCCTTTTAATTAATTTTCTCAAA
ATAAAAATTAACGTTCCCTTTTCAGTGTCCTTTCAATTTCTTTCGACGAAACTTCATTTC
TCAATTTCTTTTGATTTTGATCGCTTCGAAGAACGAATCAATTTAAGCCTGCCACAAACA
AACCCTATGGGATCCTCCTA
GenBank Accession AL753635 [GenBank]
Graphic View Graphic view of gene At1g51660
Predicted Position of Insertion Chr1:19154226 - go to primer design
BLAST e Value 3e-60
Hit Clone Code (BAC ID) F19C24
Hit Gene Code At1g51660 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation mitogen-activated protein kinase kinase 4
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit AL753635 [GenBank]

Gene hit At3g16980

 
Sequence (A. th genome BLAST matches underlined) 
>74-K012359-022-052-B10-8409
TTGATCCATGTAGATTNTCCCGGNACATGAAGCCTTTACAATTGAAACCTATGGGATCCT
CCCTATAGTGAGATCGTATTACTCAACAGAAACGAGGTTCATCACTCTGTAAGTGAGCGA
ACTCATATCTTAACGGACGTGGCTTCTGACCCTACTCTTCCCCGAACCAAGGCTGTGCGT
TGCTCTAAGTGTCAGCATAGGGAGGCCGTTTTCTTCCAGGTATAACTCTCTTAAGCTCCA
TTATTTATTTAACTACTTGGTTATGCTGTATCTTCACTGTTTGCTTCCCCAAAACATTAT
GCTCAAATTCTGTACACCGCTTGAGGATTTAATGTAGCTATCATTGAATGTGCAGGCTAC
GGCTATGGGATCCTCCCTATAGTGAGTCGTTTAACTC
GenBank Accession AL753633 [GenBank]
Graphic View Graphic view of gene At3g16980
Predicted Position of Insertion Chr3:5795349 - go to primer design
BLAST e Value 4e-152
Hit Clone Code (BAC ID) K14A17
Hit Gene Code At3g16980 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA polymerases M/15 Kd subunit
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR801420 [GenBank] AL753633 [GenBank]


Last Updated on 10.06.2021 13:37