SimpleSearch - Line and FST details


Line specific information

 
Line ID 052G08
Vector Used pAC161
Line Availability available as T3 set from NASC (N404976)
Segregation Analysis 50:46:40
Confirmed for Hit At5g22910 At5g22940
Parent of DUPLO pair 8024
Parent of pair(s) 273

Gene hit At5g22910

 
Sequence (A. th genome BLAST matches underlined) 
>63-K104554-0022-052-G08-8409
AGCCATTTACATTGAAATATCCTGATGAGCTGAAGATGTCAAACTCCAAGCTCGGCCGCA
TCGCCATATCTACAGCCGCCGTCAGCGATTTCCTTGGATTTCTCACTCTATGGGAGCCTC
CCTATAGTGAGTCGTATTACTCACCAGCTCCATTGGTAAATAAGCCTCCATCTTTATCTC
TTCTCTGTTTCAAATCTTTCACTTCTCCTCAAAAATTGATTTTTTGGGGTCTCTGATTAA
AGGTTTGTTCACCGGAATGAAGATATACGTTTACGATTTACCGGCGAGTTATAACTACGA
TTGGGTTACAGCATCAAACCGTTGCGCTATGGGATCCTCCCTATAGTGAGTCATATTACT
C
GenBank Accession FR801565 [GenBank]
Graphic View Graphic view of gene At5g22910
Predicted Position of Insertion Chr5:7663116 - go to primer design
BLAST e Value 6e-39
Hit Clone Code (BAC ID) MRN17
Hit Gene Code At5g22910 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cation/H exchanger 9
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL753857 [GenBank] AL753858 [GenBank]

Gene hit At5g22940

 
Sequence (A. th genome BLAST matches underlined) 
>63-K012303-022-052-G08-8409
GTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATAGAAGATATCCTGAACAT
CTGACTATGCCGAACTCCACCCTCGGTCGCATCGCCTATACACCGCCGGCGTACACCCAT
AACCTTGGATTTCTCTCTCTATGGGAGCCTTCCTATAATGATCCGCCATTAAAACCACCT
CCATTGGTAAAAAAGCCTCGATCTTTATCTCTTCTCTGTTTCAAATCTTTCACTTCTCCT
CAAAAATTGATTTTTTGGGGTCTCTGATTAAAGGTTTGTTCACCGGAATGAAGATATACG
TTTACGATTTACCGGCGAGTTATAACGACGATTGGGTTACAGCATCAGACCGTTGCGCTA
TGGGATCCTCCCTATAGTGANNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNNGNNNN
NNNNNNNNGNANNNNNNNNNNGNNNNNNANNNTNNNNNGNNNNNNGNNNNNNGGNNANNG
GNNNNNNGAGAATGNNGGGGNGGNNGGGGGGGAGGAGACAAACATGGGAAGGAAAAAATG
GAGTAAAAAATTGAGTTGTAGAAAATTTTGTAGAAGAAGATTTGGATGAATTGAGGGGCA
GTATGTAAGGGGAGTTATTTGAAGGTTTGAATTAGGGGAAATGGGGTAATGTGATATTGG
GTCCCTCCTATAGGGGCCCCCCCTATACGCACCAACCACACACCACCCCCTCCACGTGTT
TCATTGACAGTCAAGCACATCGGTATAACAGACAACCAACCTGCGTTCCGTCACCACATA
CCAACAACCACAACCGCCACATCACTAATCTCCCACTTCTTACTCTTCCACAAACACAAA
AAATCCTAAATTATCTCTATAAAATCA
GenBank Accession AL753856 [GenBank]
Graphic View Graphic view of gene At5g22940
Predicted Position of Insertion Chr5:7677379 - go to primer design
BLAST e Value 1e-108
Hit Clone Code (BAC ID) MRN17
Hit Gene Code At5g22940 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glucuronoxylan glucuronosyltransferase, putative
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR801565 [GenBank] AL753857 [GenBank] AL753857 [GenBank]


Last Updated on 10.06.2021 13:37