SimpleSearch - Line and FST details
Line specific information
| Line ID | 052H11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404991) |
| Segregation Analysis | 100:85:65 |
| Confirmed for Hit | At5g14870 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6275, 6283, 6284, 7796, 8851, 81582, 81612, 81621, 81654 |
Gene hit At1g40109
| Sequence (A. th genome BLAST matches underlined) | >88-K012482-022-052-H11-8409 NTTGGATCCATGTAGACTTTCCTGGACTGAANGCCTTTACAATTGAATATAATGAGGAAA TCTGTCTTAAGTATCTATAGCAATCTCACTATTGCATCCTCGTATAGTGAGCGAACAGCT ACGACGGATCGCCATAGCCGAGATGGATCAAAAAATTGGATTTCCACGTCGTCCCGGTAA AGAACGCCGCATCCACCTTACCCTTGAAGAAACCCGACATGGCGCCGGAATCCAGCCCTA TGGGATACTCCCTATAGGGAGTGTTCACGGATCAATGCGCCTGCATAAGAGAGCTAACTT AACTGAGCCTTTACCAATAGGCTCTACCCATCATGGTGTACTCCACTCTCACTCTGGCAT TGGGATCCTTAGCAATATCTTTCATCCTATGGGATCCTGCCTATAGTTGACTGGTTNAAA AGTCATTGGCTATACGGATCATGCAGCCTTGAAGCACATCTATGCAAAGAAGGACACTAA ACCTATGGGATCCTCCCTAT |
| GenBank Accession | AL753930 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:15155714 - go to primer design |
| BLAST e Value | 4e-50 |
| Hit Clone Code (BAC ID) | F13P3 |
| Hit Gene Code | At1g40109 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At3g01516
| Sequence (A. th genome BLAST matches underlined) | >88-K012299-022-052-H11-35St TTGACGAAGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGACAGTTTCAGGTGCATTCAAACCCCACTCACGCTCCCACTTTGGCG CGTGTAAACCACATACGCTGACTCACGTTTTTCGAATTTTTTTTGCGTCGACTATGGGAT CCTCCCTATAGTGAGTCGTATTACTC |
| GenBank Accession | AL753925 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:207228 - go to primer design |
| BLAST e Value | 1e-40 |
| Hit Clone Code (BAC ID) | F4P13 |
| Hit Gene Code | At3g01516 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At5g14870
| Sequence (A. th genome BLAST matches underlined) | >88-K012359-022-052-H11-8409 TTGATCCATGTAGATTTCCCGTCATGAAGCACTTACAATTGAATATAATGAGGAAATCTG TCTTCAGTATCTCATAGCAATCTCTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTC ANNGGNNCNNGNNGCGCCGAACGCGGGACAGAATTGCGTGAACATGAGCTCCAGGCGGAA GATGCCGTACACCGTTCAGCAGAGAGGCACAGCGACGTGGATCCTGATGTCTGTCGAGAG ACACGCTGTACCACCGGCGTGGGGGACGTAAAAGGCGAAAGGATCTAGGAGGAGAGCGAC GATTGAGGTCCCGCTAAAGACGAGGATCCAATAAGTGACCATGTTGCTGTCCGGCACCAG GATCTGGTGCCGCCTTAGGAAGCTGAATTGGCTACCGCTAGATGCTCGATTTGAGGCTGG CCGTGGAGGCGGAGGATATGGTCTCCTGTAGGATGTAGCGGAGAGACCGGATTGTATTCC TCTTCCATGGCGGAT |
| GenBank Accession | FR801592 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:4810476 - go to primer design |
| BLAST e Value | 7e-52 |
| Hit Clone Code (BAC ID) | T9L3 |
| Hit Gene Code | At5g14870 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cyclic nucleotide-gated channel 18 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR801594 [GenBank] AL753926 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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