SimpleSearch - Line and FST details
Line specific information
| Line ID | 052H12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404992) |
| Segregation Analysis | 50:44:34 |
| Confirmed for Hit | At3g02875 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2870, 3140, 91489, 91493, 91496, 91498 |
Gene hit At3g02875
| Sequence (A. th genome BLAST matches underlined) | >96-K012456-022-052-H12-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGCAAAGACATACACACACATATATCTAAGAATCTTAGAAAACACT AACCCACATCGAAATGAGTTTTAATTGCAGGGCACAGACAGAATCATTCAAAATTATACA TATAAATTGAGTGAAAGAGAAAAAAGAGAGACCTTGATGAGGTGTTTTGTGGTTTGAAGA AGCTTAGCAGCACCAAGAAGCATAGCAACATGAGTATCATGACCACAAGCATGCATCTTT CCATCTACTTTACTTTTCGATTCCCATTCCACTAATTCCTTTTTTTGTCCCCATTTTTTC AAATTCATTAGTCAAACAAAGCAATCTAAAAATCAGAGTAAAAATCGGAACTTTGATTAT TAGATTTCAAACCTGTAACGGAAGTGCGTCCATGTCGGCTCTAAGTCCGAAAACAGGTTT CGAACAGGATCCGATCCAAGCGACGACGCCAGTCTTCGCCACAGGATACTTATACTTCAC TCCAAGCGAGTCAAGCTCGTCTTGAACGAGTTGACTCGTTTTTGAACTCCTGAAACCCTG TCTCTGGGGTTCTATGGATCTTTCTCCTAATTCCTTTTATCCACTCGGAAGACTTAAGAT CCTTGGCCTGAATGAAGCATTCCGGCGAGCCAGTGGCTTCGGGACCCGAACCAAAATTGT AGC |
| GenBank Accession | AL753934 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:632708 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F13E7 |
| Hit Gene Code | At3g02875 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Peptidase M20/M25/M40 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g79780
| Sequence (A. th genome BLAST matches underlined) | >96-K012303-022-052-H12-8409 ATCCTCTTCCTTCTTTACTGTGCCTTGTGCTCTCCACTCCCTATAGAATCCTCCCTATAG GGAAGAANAANNNNNNTTACTTNTTTAATGTGCTTGTGCTTTNCAGTGGTTATGGGATGT TGGTTATAGTGAGNGGGGAGAGGANAAGGACTGTAAAGAAGGATGAGGATTTTATTAATG GTAAATGGTTTATGGTTGGGAAATAACATGGTATTTTTTTGTGTGTGAGGGGNAATATGG GAGAAGAAGAAAGAGTAATTACANTTTTTTGTTAATTAAAAATGTAGATGTCCGCAACGA TATTAAAAGTGGTGGGCACCCCCTCCCCGCCGCAGAGCCCCCAACACCCCCCGCGCCGCC TCGCCGCGCAAACACCGCCAACGCCCCCGACCCCCCGCCTCCGCGCACGGGCCAAGGACC GCGGGCGCACGGGACTGCGCCCCCCATCTCGCCCTCTCCACCGCACGCTGGAGGTATCCC CCCGCCGACAAGGCGCTTCCCGCCCCGACGGTATACCCATCTCCGGGACCCTACCCCGCC CAAGAACGTGCCCTGGCTTGCGTGGATGGCGACCCCCGGGGTGCCCGCGGCACGCGTCCG ACCGCTTCGCGGTGGAACTTTCAAACTCGGCGGGAGGAAGGGAAGATGTTTGTGGCGTCA GAAGCGCAAATAGCTCGAAAGGGGAGAAGGATGTGAAAGAGCGGCGACAAGAAGAAACAC TGTGGACGCGTGTGTCACCTGTTGCGTGGCAGCAGGAAAAAACATACTTCTCGTAACGCC AGTGTACTTGTGGTGCGTCGACCGAGGAAACACAAGTAAGCAACAGTGTACTTGGTACGA GGGGGATTATAGCCTGACCACGACGCAACGTGAACACACACATACACTAAAACAAAA |
| GenBank Accession | AL753931 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:30016815 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | F20B17 |
| Hit Gene Code | At1g79780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Uncharacterized protein family (UPF0497) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
