SimpleSearch - Line and FST details
Line specific information
| Line ID | 053A11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405003) |
| Segregation Analysis | 100:95:70 |
| Confirmed for Hit | At1g65040 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12114 |
Gene hit At1g65040
| Sequence (A. th genome BLAST matches underlined) | >81-K012455-022-053-A11-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAAATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGAACTAATTTCAGCATGTTAATAATTCATGGATTTAGGTTT CTTTTGGTGGTATAACATCTAAGTTTGGAATAATGAAAACGTGAATAAACTAAAAACTTA CATGAATATCATCATGAAGAAGCAAAGATACATGGACAAGTGAACCAAGTCACGAACAAG CTCCAGATAGAAAGCGTATACTGGTTTTCCTTCCCATTGACCTTCCTTGAGCATATCAAT GACATAGAAGGCATACTTCACAATAATAGAAACAGTTGTTGTTGCCAGAATCATATACCT GCAACATAAAATTCGTAATTAAGTCTAAAGCTATGGGGTCCGACGTATAATGAGATAAAA CTCTATTGTCAGATCAAACAGCTAAACAGGGGGACATATCACATGGTCTATTGATGGCAT ATCCAAAGAAGGATACATAACTAAACAATATGCACCGTAAACAAAGCTAATAACATGAAT AAATATCCTGATCTCTTAATCACCTGAGCCCTTCCCCCATATATTCAGCTATTTTCGACA GATGTTTCATGTATCTTTTGTGTTTGATAGCTGGCATAAGCTTTAAACTATGGGGATCAT CATACAGGATCCTAGAAACCTAACCGTATCTAAGAGGGCCTTTAGGGAGGGTCATAGAAA AACCCTTCCCAATGGTTCCCCATATAGTAAGTCTCTCCTGCACCAAAGGAGCTGAAACAA A |
| GenBank Accession | AL753984 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24161721 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F16G16 |
| Hit Gene Code | At1g65040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL753983 [GenBank] AL753985 [GenBank] AL753982 [GenBank] AL753982 [GenBank] |
Gene hit At1g65340
| Sequence (A. th genome BLAST matches underlined) | >81-K012481-022-053-A11-8409 TGATCCATGTAGATTTCCCGGAAAATCTTACCAATTGATGCAAATTATGAAAGTTTACAT TGATGTCCCCACCCATAAGTCTTTTTCTAATCAGAATATTTTAGGTGGTGTTATGGGTTA GTTTGGGTTTATATTTCATAAGTCTTTTTCTAAAGTTTATATCTTAGGTTTAAAGTTTTA TCGGATTTTAAAAAACATTTGGGTTCATTGAAAGTGAATCATTAATCATTTTGTTAAATA CGTAGAAGTGTATATTCAACGATACGTGATGTCATTTGGTTTTCTATTATTGAATGAAAT TTTATAACAAATGATATGGTAATCTAAACAAAATCCAACAAAACTTTTGACCATTTTTTA TTTTTTTATTTCAAGCTTTTCTACTATTTTAAAGTCTTTTTAAGAAAATATAAGCTAAAA TTTTGTTCATAAATCTTTCGATAATTCCAAATCAAAACTTTTTAAAAAAAATAAAAGAAA AATACATGAAAAAACCTTTAAAAAATCATTAAAAAAACATAAATCTACATTTATTTCATT CTACCTATGGGATC |
| GenBank Accession | AL753986 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:24269923 - go to primer design |
| BLAST e Value | 2e-172 |
| Hit Clone Code (BAC ID) | T8F5 |
| Hit Gene Code | At1g65340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 96, subfamily A, polypeptide 3 |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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