SimpleSearch - Line and FST details
Line specific information
| Line ID | 053B09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405013) |
| Segregation Analysis | 100:85:57 |
| Confirmed for Hit | At1g35670 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 5266, 5276, 7544, 8649, 81965, 81992, 82022, 82097, 82209, 82225, 82242, 82258, 82288, 82315, 82343, 82344, 82345, 82347, 82348, 82350, 82351, 82352, 82353, 82354 |
| Note |
Gene hit At1g35670
| Sequence (A. th genome BLAST matches underlined) | >66-K012428-022-053-B09-8409 TGATCCATGTAGACTTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGCATGTA GATTAATTGTAAACTTAATGTGTAGATCGAAATTATTCTGCATTTGTGTGTCTGGCTTGA ACCTTCTCATTAATGCCAGTTTATCGGCTAATTGGTTTTTGTTTGCTTCTTCAGGACAAT ATTTATATGACGTAGTTGGAAGTCCGTACTATGTTGCACCAGAGGTGCTAAAGAAATGTT ATGGACCTGAAATAGATGTGTGGAGTGCTGGTGTTATCCTCTACATTTTACTCAGCGGTG TTCCTCCCTTCTGGGCAGGTTAGTCTACTAAAAAAGTATGGGATCCTCCCTATAGTGAGT CGTATTACTCATGGGATTGATGTTTTCTTTACTCTGGGGCATGGAAGAGACTGATTCTGT AATCTTTATACAGATATTGCAGGGGAAGTTAGATGTCCAATGTGACCCGAGGACTACTAT CGCAAAAACGGCTAAAGATTGGATCTATAAAGTGCTCGAGAGGAGCCGAAACAAACTCAT TGCTGCTAATGAAGCCTTG |
| GenBank Accession | BX942855 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:13206570 - go to primer design |
| BLAST e Value | 9e-150 |
| Hit Clone Code (BAC ID) | F15O4 |
| Hit Gene Code | At1g35670 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | calcium-dependent protein kinase 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX942856 [GenBank] BX942855 [GenBank] |
Gene hit At2g23096
| Sequence (A. th genome BLAST matches underlined) | >66-K012358-022-053-B09-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGTAGTG ATAAATCTGGGATCCTCCCTATACTGAGTCGTATTACTCAAAACCGAAGACACTGATAGT TTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTACCCTGTCCTCTCCAAATGAA ATGAACTTCCTTATATAGAGGAAGGGTCTTGCGAAGGATACCTGGGATTGTGCGTCATCC CTTACGTCAGTGGAGATATCACATCAATCCACTTGCTTTGAAGACGTGGTTGGAACGTCT TCTTTTTCCACGATGCTCCTCGTGGGTGGGGGTCCATCTTTGGGACCACTGTCGGCAGAG GCATCTTCAACGATGGCCTTTCCTTTATCGCAATGATGGCATTTGTAGGAGCCACCTTCC TTTTCCACTATCTTCACAATAAAGTGACAGATAGCTGGGCAATGGAATCCGAGGAGGTTT CCGGATATTACCCTTTGATGAAAAGTCTCAATTGCCCTTTGGGCTTCTGAGACTGTATCT TTGATAGTTTTGGAGTACACAAGCGTTGCCGTGCTCCACCATGTAGACGAAGATTTTCTT CCTT |
| GenBank Accession | FR801634 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:9836239 - go to primer design |
| BLAST e Value | 0.36 |
| Hit Clone Code (BAC ID) | F21P24 |
| Hit Gene Code | At2g23096 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
| Other FSTs Supporting this Hit | FR801634 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
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