SimpleSearch - Line and FST details
Line specific information
| Line ID | 053D01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405029) |
| Segregation Analysis | 50:30:30 |
| Confirmed for Hit | At1g30680 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 97537, 97538 |
Gene hit At3g05060
| Sequence (A. th genome BLAST matches underlined) | >04-K012428-022-053-D01-8409 TGATCCATGTAGATTTCCCGGACATGAAGCACTTACAATTGAATATATCCTGATTATCTA AACTATTGGTCTGCGTGATGATCTTGACTAAGATCTGAACACATCCGCCATGAGGGCTTT AGAATGGCATGGATGGTATTTTACTGACCTTGCTATATCATTTACACAATATCCTATAGG CCAAATCTGTAAATCGATGGGAAACCCAAATAATGCTGCAAGCTATGGGAACATACCTAT ACTGAGATGTTCTACTAAAAAAGACACGCTTACTATATACAAGTTAGCTCACTAACTCTG TTGTACCCACGAACTCATGTATACTTTAAAATGTAACCTTTTTCACGAGACTCAACATGA ATCCCAATATAGCGAGCTCGCGTTACTGAAAACATCATGCATCTTGTACTATTGTCTGGG ATGGGATAAACTTATCAACATTACTATGAAACCTACCTATAGACATATCAAGCCACTTAT GTTGTCCTGGGGGGGCAATTATCAGCATCAACTCCCTGTTCCGCCAATTTACGCCTCAGA GTCACTAATCTA |
| GenBank Accession | FR801644 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1414619 - go to primer design |
| BLAST e Value | 1e-25 |
| Hit Clone Code (BAC ID) | T12H1 |
| Hit Gene Code | At3g05060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NOP56-like pre RNA processing ribonucleoprotein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR801644 [GenBank] |
Gene hit At5g24520
| Sequence (A. th genome BLAST matches underlined) | >04-K012455-022-053-D01-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GGGCAGTTTCATTTGGAGAGGACAGGCTACACAAGCATAACATTGACAGGGACCCGCCTA CTGTCTAACCTATCCAAGGCTAGAGGATCCTACGTATGTTGAAGCGAGAATTACCCATGG AGGGTATAGAGCTATGGGATCCTACCTATAGTGAGTCCGATTACTCAACATGGAGCAACA ATGAATATGACGGCCAATGTGGAGAAAAAGAAAGAGTAGTGACCAACATTGTATCGATTC TAAAATGTAAATGACCGCAGCGCCATTATAAAATGAAAGAACATTTTGATGAAACGACAA CAAACGATCCTGCGTTGTTATAGGCGAAAGCAATGAGCAAATTATTCTAATTCGGAAATC TTGATTTCGACGCGGTACATCTCCGTGCAAATGGTGGCTGAGATGAGAAACTTCTCGATC GATGCCTTGAAATCCACAGTCCGAGATACCCATNTTATAGACGGATTGAACTGAGAACAT GCGAAGCATTGCACTCATCTTCATAAACCACTGCCAGTCTGAGCTACCAGTTCAGTGTCC CCGATGGCCTTACTACACTACTCAAATGCTATGGGGAATCTGCGCTAACAGAGGAATATA AACTTCAAGTACAAATCAGATAGAACCGAAGCCATTGGCGGCCCTAAAAGCGAAAGGGAG CGCAACCCCAACCTACTTACCCCCAATGAGAATATACGGGTCTATGCTAAAAACCTTAAG GAGAACTTCCAATGGCCCCTGACTTCAGGGAAAGGATAGCAATTTAAAGGAAGGGTTTTT G |
| GenBank Accession | FR801645 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:8370363 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | T31K7 |
| Hit Gene Code | At5g24520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transducin/WD40 repeat-like superfamily protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At1g30680
| Sequence (A. th genome BLAST matches underlined) | >04-K012485-022-053-D01-35St TACTTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAG GGAGGGCAGTTTCTTCTTAGGAGAGGACAGGCTACACAAGGATAACATAGACAGGGACCC GCCTTCTGTCTAAACTATCAAGGCTAGAGGCTATCTACATATGTTGAAAGAAAAATTACG GTGGAGGGTATAGAGCTATGGGATCCTCCCTATAGTGAGTCCGGGAAATCTACATGGATC AGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCA ATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACATTTTGATAAAACG ACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGA AATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGGCTTAAATGAGAAACTTCA CGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCATCTTCAGATTGGTCTGAG ATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTGAGCTACCAATTCAGT GTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCCTGCTTAAGAGGAANGN NNNNNNNNGAANNGACANGANAGAGGAACAGAATTGGTGCGCGANGGAAAAACAAAAGAG AGCCAACACCCACCCCACCCACCCCAA |
| GenBank Accession | AL754076 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:10882796 - go to primer design |
| BLAST e Value | 3e-11 |
| Hit Clone Code (BAC ID) | T5I8 |
| Hit Gene Code | At1g30680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | toprim domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR801646 [GenBank] AL754076 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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