SimpleSearch - Line and FST details
Line specific information
| Line ID | 054A07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405095) |
| Segregation Analysis | 100:100:74 |
| Confirmed for Hit | At5g20040 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit F21M11
| Sequence (A. th genome BLAST matches underlined) | >49-K012384-022-054-A07-35St TCTTCTGCCTCTCTCACACAACTCAGTCCCTCTTCGACGGTTTATTGCATCCGCATTTTG AAGCAACATGAACAGACCTCTGTGCGAACGCTACTCTTTTTTTTTTGTGAAGCATTGCCT AATTCTTTACGTAATTCATAGAGAGAGAGAGAGAGAGAGCACAGAGATAGATCCTTTCTT TTACCGCGCCCGCCCCCGCCTCTCTGTTAGTGTGCGCGCCCCTTCGCCCCACACTCACTC TGTCACTGTGTTTATGGTGCGTGTCTCCCCGCCCTCTCTTCCCCCTGGAGAGATAGATCC CGGTTGACAAGAAAGAAGTGCGCCCTCTCCCTACTGCTGTCCCTCCATGTACCAGCAGGC ACACCCAGGACTGACTCTTCCTCACTCTCCACGCCCCCCCCGCCCCTCCACGCAAACTAC CACCTCAGCCTCGCGCCCTGCCACGCCCACCTCCCTCCCCTATCTCCTCTATCCAT |
| GenBank Accession | AL754315 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1022115 - go to primer design |
| BLAST e Value | 7e-21 |
| Hit Clone Code (BAC ID) | F21M11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
Gene hit At5g20040
| Sequence (A. th genome BLAST matches underlined) | >49-K012471-022-054-A07-8409 TTTGATCCATGTAGACTTTCCTGTGACATGAAGCCTTTATAATTGAATATTGGCGTTAAG CCATTTCATAAAGCTCATCTCGAAGAGAGACGAAGACAGTGAGCAAGGGATTATAGAACT GCGGTTCGGTTAGGTTTACACATAAACCGAGCAAGCGAACCGAAATTAAACGGTTGTACT TAAACCTAGCAGGACCCTGGGGATAGGGTTCCAGGTGTGTGCTATACCAACGGTTGATTT AGTTGTATCTATAGGCAATCTTCATAACTTGACCTGCTTGGAGTACTATTCTAGCCTAAA GCAGTAGACGCGTAACTGGTGGCTATTTAAAAAGAGCGAGATGGCGCGATGAGGATATGG GGACGTCCAGACGAGAGCAATGGATTCAGGGTCTGACCGTGATATACAGCACACAATGCA GTGGAGGCAATCTGTTGGTACGGATTGACAGACTACGCCGTAAGACAGTTTAGACTCCGA CTTCGCTTTGGGATATGGGATACATGCGTANAGAGAGGGACNNNGCTACCGACCACCCCA CTCCCAGGTGTATAAAGGGCCTTGATGTTGGATCAGCCAAGCCTTTAGATATCGATAGAA AGGGATGTTTCTGAAATATATGGGAAGAATGATTCCTTTTTATCTCACGGTGGGGCCGCT CGGGAACACATTGCACTGGAAGGTTGATGTCTTACAAATTATTTAGGGGGAGGCCTATCA TTCTTATCAACATTTGGCCTTCCGTCCAAAGGATTAGCCGACTTTGTTGCTATTGCAAAT GCC |
| GenBank Accession | AL754318 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:6771073 - go to primer design |
| BLAST e Value | 2e-49 |
| Hit Clone Code (BAC ID) | F28I16 |
| Hit Gene Code | At5g20040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | isopentenyltransferase 9 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL754314 [GenBank] AL754313 [GenBank] AL754313 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
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