SimpleSearch - Line and FST details


Line specific information

 
Line ID 054C05
Vector Used pAC161
Line Availability available as T3 set from NASC (N405117)
Segregation Analysis 50:47:42
Confirmed for Hit At1g08820
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g08820

 
Sequence (A. th genome BLAST matches underlined) 
>35-K012480-022-054-C05-8409
NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGATAGT
TTAAATGGCTTCATGTCCGGAAATACGGTTAAGGATGCGGATGATGGAAGGGCGATTAAG
GCAACAACTAATTTGGACGCTCCCATGAAGAAGGCCATGGATCTACCTATGGGATCCTCC
CTATAGTGANNNNNNNNNNNNNNNNNNN
GenBank Accession AL754404 [GenBank]
Graphic View Graphic view of gene At1g08820
Predicted Position of Insertion Chr1:2822466 - go to primer design
BLAST e Value 2e-37
Hit Clone Code (BAC ID) F22O13
Hit Gene Code At1g08820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation vamp/synaptobrevin-associated protein 27-2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL754404 [GenBank]

Gene hit At1g47128

 
Sequence (A. th genome BLAST matches underlined) 
>35-K012471-022-054-C05-8409
GAGCTTTAACACAATTCTTTTTCAACTTCTTTTGCATTAATTTAGCTCTGCTATGGGATC
CTCCCTATAGTGANNCNNNGAAGNCCGGGCGAAAATGACTTGCGACCAAAACGGAGAAAG
GGGGAGGCCTGCCGACGCCCTCCCACCTCCAGGGAGAGCGCGGGGCGGGTAGAAGGTACG
TTAGCGGACGCGGCCTAGGGAGAGACAGGCATTGTCTACCCTCTAGAGATGAGGTAGGAG
AAGGGGAGGATACCTAACTTACCAACAAACAAGTCCACTAGATCAAGGTCACAGACCGGA
AACGAAGAGAGGGCGAGGAACACTAGTCGTAACCATCAGCAAAGAGGCTGCGTCGTGCGG
CACTACGACCTACTGGGCATGGAACTATTGGTTGCAAACAGGACGCGGGCGAGCAGTGCC
CATGCAACACCAACGATGAACAAACATGCTCGGTGCATGGCAATCGAAGCAGTATGATGA
CCGTGGATGGAACGGGTGTCCCCGACGGTAAAGGGGAGGTCCGGGCACCGTAACTCAAAT
GTGGACACTCGGAACGCAAGGGGGACATCGGAGATACCGGCACCGCGGACCGCTAGCGAA
AGGGGAACCCCCCGGGACGCTGTTCACTACCCCTCCAACCGTTGCGACGCTCGGCGGCGC
GCGCCCGAGTCCACGCCAGTACGGCCGGCGTACGCGGGCGCCCCCCACCGTGAGGCGCGC
CNCTCCCCGCGGCCGTCTGGTGCCATCGCAGTCCGTGGCAGACCTCAATGCTCTCCCG
GenBank Accession AL754403 [GenBank]
Graphic View Graphic view of gene At1g47128
Predicted Position of Insertion Chr1:17282907 - go to primer design
BLAST e Value 3e-20
Hit Clone Code (BAC ID) F2G19
Hit Gene Code At1g47128 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Granulin repeat cysteine protease family protein
Insertion Classification TS2TE (3')
Confirmation Status unknown
Other FSTs Supporting this Hit FR801750 [GenBank]


Last Updated on 10.06.2021 13:37