SimpleSearch - Line and FST details
Line specific information
| Line ID | 054D08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405132) |
| Segregation Analysis | 100:99:74 |
| Confirmed for Hit | At1g14110 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 93419, 93429, 93433, 93436, 93438, 93440, 93441 |
| Note |
Gene hit At2g01008
| Sequence (A. th genome BLAST matches underlined) | >60-K012471-022-054-D08-8409 NTGATCCATGGTAGATTTCCCGGACATGGAAGCCTTTACAATTGAATATATCCTGGNCAT GAATTTGACATACGTGTGTATCCTTGCTACAGGGTTTGAAGAGAAATCTTGCTTAAGTAG GTATGATCAGTCTATGAGCAAGCCTTCACCATACAAACCATCTATGGGAATCGTGCCTAA AGCGAAGAAGCTACGATGATGCTCCACAAGCGTGTGCGGGCCTGGCACAAAAGCTTACAA GAGAGCTACGAAGCAGCTCGGCCACAATGAATGAACCGGCTCTGGAGATGAATGTCGGAA TGTAAGGTGGATGCCTATGACCGGGCTATGGGATCCTCCCTATTAGTGAGGTTGATGTTA TTCCGAGAATTAGCAAACCGTAACGAAGATGTTCTTGGCAACCATCTTTTGATGGGAGTC CGGCTGTTCGATAGCCGGCCAAGGGTGATGAACGAAATGTGAACCCTTGTCTCGCCTAGG TTGGATGGGCGTGCTTCGTTGGAAAGCATGGATCCGCCTAGGCTGTCCCGAGTGTGAGCG AGGTGTGAGTGTCGCCCATGGGCATCGACACCTTGCGGCTATGGGATCCTCCTAATAAGG GAANNNNGAAAAATAAACAAAAATTCCTTNNNTNAAAAAAAATAAAGCCTTTCCTTATAA AANNCACTTGCTTTCTCCNAAAAATCCACCTTTTACTTTCTTCCATCTTTTATGGAAGGA CCCTTAAGTTCCAAACCAAACTCATTAAACTATTGCCCACGAAAGAAACCCGGTTTTCAC CATTTGGGCCGGCCTCCTTTTCCACCCCACAACCAAATT |
| GenBank Accession | BX942860 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:2357 - go to primer design |
| BLAST e Value | 1e-127 |
| Hit Clone Code (BAC ID) | F23H14 |
| Hit Gene Code | At2g01008 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | maternal effect embryo arrest protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At1g14110
| Sequence (A. th genome BLAST matches underlined) | >60-K012357-022-054-D08-8409 GTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGCCAT GAATTTGACATACGTGTGTATCCTTGCTACAGGGTTTGAAGAGAAATCTTGCTTAAGTAG GTATGATCAGTCTATGAGCAAGCCTTCACCATACAAACCATCTATGGGATCCGCCCTTTA GCTGAAGAGCATACCAGATGCTTCACAAGCGTTGCGGGCCTGGCACAAAAGCTTACAAGA GAGCTACAAAGCAGCTTGGTCACAATGAATTAAGCAGCTCTGGTGATGAATGTCGGTATG TAGTGTGGATGCCTATGTTTGGTCTATGAAACACACTGTATAGTGTGGTTTTNGACTTAC TCTATGTTCTCTGGACAGATCGAGTCATGCTTGGTGACCAACGGAACGATATAACTGACC TCTTCTGCGAGCCTTTCCCCGAAACTTCCTGGTTACTTCCTCTAGATTTTCCATTGAATG ATCAGTTAGATAGCTTCAACAGGGAACACTCGCGATGTTACGGAACAATGTTGAAGAATC GTGGCATTCACTCAACTTGAGTAAACCCGGCACATCTTTATCTTGATATTTTCCATGATT CCAGGGATCATGACAAAAAGGTCTTCTGTGAAAGAAAATCAGCCTTTCCTTGATAAAGGC CCCTTGGCTCGTCGGGAAA |
| GenBank Accession | BX942858 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4830506 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F7A19 |
| Hit Gene Code | At1g14110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | fucosyltransferase 9 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX942857 [GenBank] BX942858 [GenBank] |
Gene hit At5g56560
| Sequence (A. th genome BLAST matches underlined) | >60-K012454-022-054-D08-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGATGCCGCTTAGCACCCGGAGGAGCTTGCATGCTGTTTTCT ACTCTCATCTGATCCGGTTTGGTTTATCTTTTTCATTGACAACTGAGCCGAGCCACCTTC CCCCCAAACAGCCAGCGACCGTGCGCCTGTTGATCCACATGGGACTTTTTTACTTCATCC GTCGAACGGCGTTGCAATAGAAGCGATCCATTCACCATATGGGACGACCCACCGGGCAGG CGCTCATCGCTATCGCAACATTTTGAACTCTTGTACTGTCGACCCTACGATCGCACAACC CGGCCCACGACTGAGGCCGGCTCAACCCTTGCGCTCGCTTCATGCATAAGGATGCTGACG TTCTCTGCAGCACGCTTATCAGAACTACATGCTGACAAATACTATGTTACGCGTCGGCAT GCCGTCCTGCGCTTGTCCTGTCGTGTTCTACTAAACTGTGATATGCGCCTAGAGTATCTA CCTTACCACTAAAGCCCGATTAATTACCTCCTTGAACTTTACCGTCACCGTTGGCCTGGC TGGCTATGGGATCCTCCCTATAGTGACAATATTTCCCTAACCTGGGGAAAACAGGAGCAG TTTTTGGTTACCTATTGGGAAAACTTTTAGGATTTAATATTTATTCCTAAATTCCATCTA TTTTAATATCCAAATCCCTAAGGAGTTCAGAGGTTTTGTCCCTATTAAAAAGGTAATAAT TA |
| GenBank Accession | FR801764 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:22901565 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | MKN22 |
| Hit Gene Code | At5g56560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | FBD, F-box and Leucine Rich Repeat domains containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 054E10 |
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Last Updated on 10.06.2021 13:37 |
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