SimpleSearch - Line and FST details
Line specific information
| Line ID | 055H10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405278) |
| Segregation Analysis | 100:97:97 |
| Confirmed for Hit | K16E1 MNL12 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit K16E1
| Sequence (A. th genome BLAST matches underlined) | >80-K012470-022-055-H10-8409 NTTTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAAAATATATTTAAA CCTAAGAGAAAAGAGCGTTTATTAGAATATTCGGATCTTTAAAACGGCGTGAAAAGGTTT TTCCGCTCGTCCATTTGTATGTGCATGCCAACCACAAGGTTCCCCTCGGGAGTGCTTGGC ATTCCGTGCGATAATGACTTCTGTTCAACCACCCAGACGTCGGATAGCCTGACGACGGAG CAACATTCCAAATAGATCCCTTGGCTCGTCTGGGTCGGCTATGGGATCCTCTATTAAGAG ATNACAAATTCATATTCATTAACGCTAATATGAACGTGATCTTTATTATTTTATTAGACA TAACTCACATATGAACATAGAGTATTCTTACATACTTGACTTTGAAATACATCATGCACA ACTTACATATGAAAACGTCTTTGATCTTAACAAGTCACCGAACTTGGATCATGTAAAGAA AAGCTCTAGGGGGCGAACCGAACAACAGGAGTGCACTTAAGCGGATGAGCCATTTTCAAA CTAAGTCCTGAAACAGCCTCTTCCATGTATACTTTCTCTCCTTTAATTCTCCAGTCAAAA CACTGCACCATCGCTCCAATCGCAGTTTCCATAAAGATATGAGCTATGGGATCC |
| GenBank Accession | BX890732 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17023484 - go to primer design |
| BLAST e Value | 2e-147 |
| Hit Clone Code (BAC ID) | K16E1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MNL12
| Sequence (A. th genome BLAST matches underlined) | >80-K012479-022-055-H10-8409 NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACTTCGGCTCATGTATGAGGACA GGGTACCCGGACATGTCTATTTCCCGGGAATAGATGCCATGAATGCACTCTGCATGCAAC TTAAAGCACATGTAATGTAGTATGGAGGTCCTTATTCCTAAGACAACCATGTATTGCTCA AAAGTACCTCACACATCTTCTCATACAATGGAATATACCATAAAGCATTTCTGGAGCTAG TGTGCAGATGCTCCAGCACCTTCTTCTATACGACCAATTTTTGCACACGGCCTTTGCAAG ACCGATAGTCGGGCTTCAACACACCCTATGGGATCCTCACTATAGACGAAAGAGTTAGAA CTTATACAAATACGTACGGAGCAAACCAATCTCATCTAACTCTGCATAATCTGTTTCAAA CACCTGACGGTCTATCCTTCTTGTAAGGATGTTATTCATACCTAATATTAATGTTTCCAT CTCCAAGTGAAGAGGCAAAGAACTCTGTCGGCGACATATTGATCCTATGGGATCCTCTAT AAAGAGACNNGGCCGNCTTTCTCCCTTCGGGAAGCGTGGCGCCTTCTCATAGCTCACGCT GTAGGTATCTCAGTTCGGTGGAAGTCGGTCGCTCCAAGCTGGGGCTGGTGCACGAACCCC CCGGTCAGCCAGACCGGTGGGCCTTATCCGGTACCTATGGGGCTGGGTCCCACCCCGGAA GAAACGACTTAACGCCCCTGGCCGCAGCCACTGGGAACAAGAATAACCAAACGAGGGATG GTGGCGGGGCCACACGAGGTCTGGAAGGGGGGGCTAACTACGGGTACCCTAG |
| GenBank Accession | AL754915 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:17376455 - go to primer design |
| BLAST e Value | 7e-89 |
| Hit Clone Code (BAC ID) | MNL12 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | FR801906 [GenBank] |
Gene hit At2g40480
| Sequence (A. th genome BLAST matches underlined) | >80-K012383-022-055-H10-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGACAGGATATACTCGGCGGCTAAACCTAACAGAAAAGAGCG TTTATTCTAATAATCCGATATTGAAAAGGGCGTGAAAAGGTTCATCCGTTCGTCCATTTG TATGTGCATGCCAACCACAGGGTGCCCCTGGGGAGTGCTTGGCATTCCGTGCGATAATGA CTTCTGTGCAACCACCCAAACGTCGGAAAGCCTGACGACGGAGCAGCATTCCAAAAATAT CCCTTGGCTCGTCTGGGCCGGCTCGCCTGGGATCCATGATGTCAGGATTCAACCCGGTTC TGAGAATTCCGGCTTCTGTGTTGATCCGGTTGGTGTTTCTAATGTACCTGAAATTAGGAA AGATGGGTTGATAGCTGAAATTGATACTTCTGCTCCATTCGGATCGGTTCAGGAGGCGGA GACTCGATTCAGAGGACGTGGTTATAGGGTTCCTTTCAAGCTCGATGACACTTTCGTGAA GTTTGATCTTTCTCAGATTTTTCTTCCACGTCAGAACAGTGTAGTATACCAACACATTAG TCTGCATTGCATACTAACATTCGATGCTTTGATGGCGACCATCTCTACATTGATGTTTAC CAGGCAAATTTCATGACTTCTGTGGAAACATGGAAAATGGATTGATGACCTTTGTGCAAT CCACTGGCCTTACAATGTGGAGATCGAATATAAC |
| GenBank Accession | AL754914 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:16910483 - go to primer design |
| BLAST e Value | 2e-123 |
| Hit Clone Code (BAC ID) | T2P4 |
| Hit Gene Code | At2g40480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | WEB family protein (DUF827) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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