SimpleSearch - Line and FST details
Line specific information
| Line ID | 062E06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N405910) |
| Segregation Analysis | 50:50:36 |
| Confirmed for Hit | At3g09910 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6392, 6393, 86537, 86813 |
| Note |
Gene hit At3g09910
| Sequence (A. th genome BLAST matches underlined) | >14-K024135-0022-062-E06C-8409 NNNGGGTCATNCNNNNNNTTGGTGACCATGTAGATTTCCCGGACATGAAGCCATTTACAA TTGAATATATCCTGTCCGATAATATATCCTAGGGATCATCAAGATTCTTTCTTACCTTCA AAGCTAGCTCTTCGAAGCATCCGTTCACGTTTTCTCGGGTTCTTGCGCTACATTCATGAA ACAAACAATTGAGGTCTTTCGCTAGAGCCATTCCTTCTTCCCGGCTAACCTTCCTTTCTG ATTCCTGCAATGACAACTATCAGTGAAACCGATCTCAAGTTGTTTGACTACAAGTGTTAC TACTACTGCTACTCACTCTATCAACTTTGTTGCCAACGAGCATCTTAATGCAGTCATGGT TAGTCGAATATAGCTCAATCTCTTTAGCCCAAATATCTGCCAAGTTCAAAAATGTCTCTC TTTTCGTGACATCATAAACTGCACCATGACCAAGAAAATCCGGAGAGAGTATTAATACAA GTCTTGAGAACTTATTACGACAACAGCTACTGACAATTATATGATCTCATATATCATTAC CGAGAATGATTCCTTGGGAGCCTCTGAAATAAGAACTTGTCAATGTTCTGAACTTTTCTT GTCCAGCTACACAACAATCACAAACAAGAAATCACATGGACCATGAGTTTTGTAGTAACC AACTACACACGTTCNNAAAACTCAAGGGNNNNGGGTGATTTCTTGTTTGTGATTGTTGTG TAGCTGGGACAAGAAAAGTTCAGAACCATTTCCAAGTTCTTTTTTCANTGGCCCCAAAAA AAAAAAATTCCCCTCCCCTCTTTTTTTTTTTTTTCTATTACCCATTCAAAATAAATTCTT TATAACTTTTAAAAACAATTTTATTTCCTTACAAANCACCCCTTTTTCACTCCTCCTCAC AATACCCNNNNNTATTTCCTTTTCTCTTTTTTT |
| GenBank Accession | HE664258 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:3037025 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F8A24 |
| Hit Gene Code | At3g09910 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RAB GTPase homolog C2B |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g38430
| Sequence (A. th genome BLAST matches underlined) | >45-K016090-022-062-E06-8409 CTGCCCCATAATATATCCTATCGGATCTACAGGATTCTTTCTTACCTTCAGAGCTATGTC TTCCTCGCATACCGTCGCGCGATTTCTCGGGTTCTTGCGCTACATGTACATGAAAGGATC ACATTGAGGTCTTTCGCTATGGGATACCTCCCTATAGCGAGATTCTACGGTGCAATCGGC CGCGGTGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGTTAAGAAGGTCAA CACTGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTT CGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGGCTATGGGATCC CCCCTATAGCGAGA |
| GenBank Accession | AL936957 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:15385264 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
