SimpleSearch - Line and FST details


Line specific information

 
Line ID 062E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N405910)
Segregation Analysis 50:50:36
Confirmed for Hit At3g09910
Parent of DUPLO pair none
Parent of pair(s) 6392, 6393, 86537, 86813
Note

Gene hit At3g09910

 
Sequence (A. th genome BLAST matches underlined)
>14-K024135-0022-062-E06C-8409
NNNGGGTCATNCNNNNNNTTGGTGACCATGTAGATTTCCCGGACATGAAGCCATTTACAA
TTGAATATATCCTGTCCGATAATATATCCTAGGGATCATCAAGATTCTTTCTTACCTTCA
AAGCTAGCTCTTCGAAGCATCCGTTCACGTTTTCTCGGGTTCTTGCGCTACATTCATGAA
ACAAACAATTGAGGTCTTTCGCTAGAGCCATTCCTTCTTCCCGGCTAACCTTCCTTTCTG
ATTCCTGCAATGACAACTATCAGTGAAACCGATCTCAAGTTGTTTGACTACAAGTGTTAC
TACTACTGCTACTCACTCTATCAACTTTGTTGCCAACGAGCATCTTAATGCAGTCATGGT
TAGTCGAATATAGCTCAATCTCTTTAGCCCAAATATCTGCCAAGTTCAAAAATGTCTCTC
TTTTCGTGACATCATAAACTGCACCATGACCAAGAAAATCCGGAGAGAGTATTAATACAA
GTCTTGAGAACTTATTACGACAACAGCTACTGACAATTATATGATCTCATATATCATTAC
CGAGAATGATTCCTTGGGAGCCTCTGAAATAAGAACTTGTCAATGTTCTGAACTTTTCTT
GTCCAGCTACACAACAATCACAAACAAGAAATCACATGGACCATGAGTTTTGTAGTAACC
AACTACACACGTTCNNAAAACTCAAGGGNNNNGGGTGATTTCTTGTTTGTGATTGTTGTG
TAGCTGGGACAAGAAAAGTTCAGAACCATTTCCAAGTTCTTTTTTCANTGGCCCCAAAAA
AAAAAAATTCCCCTCCCCTCTTTTTTTTTTTTTTCTATTACCCATTCAAAATAAATTCTT
TATAACTTTTAAAAACAATTTTATTTCCTTACAAANCACCCCTTTTTCACTCCTCCTCAC
AATACCCNNNNNTATTTCCTTTTCTCTTTTTTT
GenBank Accession HE664258 [GenBank]
Graphic View Graphic view of gene At3g09910
Predicted Position of Insertion Chr3:3037025 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F8A24
Hit Gene Code At3g09910 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RAB GTPase homolog C2B
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined)
>45-K016090-022-062-E06-8409
CTGCCCCATAATATATCCTATCGGATCTACAGGATTCTTTCTTACCTTCAGAGCTATGTC
TTCCTCGCATACCGTCGCGCGATTTCTCGGGTTCTTGCGCTACATGTACATGAAAGGATC
ACATTGAGGTCTTTCGCTATGGGATACCTCCCTATAGCGAGATTCTACGGTGCAATCGGC
CGCGGTGGCTCCATTCGGCGGCCTCAAATCCATGACTGGATTCCCAGTTAAGAAGGTCAA
CACTGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTT
CGGCATTCTGAATCTCACCGAGGACTCCTTCTTCGATGAGAGCCGGCGGCTATGGGATCC
CCCCTATAGCGAGA
GenBank Accession AL936957 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15385264 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification TS2TE (5')
Confirmation Status failed


Last Updated on 10.06.2021 13:37