SimpleSearch - Line and FST details
Line specific information
| Line ID | 076F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407271) |
| Segregation Analysis | 100:63:19 |
| Confirmed for Hit | At4g25560 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g25560
| Sequence (A. th genome BLAST matches underlined) | >86-011889-strizhov-F11-8409 GTGATCCATGTAGACTTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTAATGAG AAATTCTACCTTACTTATTTCCCAATTCCTGCATTCTATTTGACTTTTATGTGCCATTTG TCGTTTACTATAAACGCGCCCGTTTGGGCCTTTGTTATCACCGTTGGTGGAAGCCCTATC TGTTAACATGTGGAGATCATATGTTGTTCTATTCACAATTATTCTATCGAGACGAGTTTT CTTGCTTCAGGACGGACCCATGGCTACAGAGAAATGGCAATCACGTAATTTGGAGAGAGA CAGAGGATCTGGTGATGGGCACCTGAAGAAGACCAAAAGCTGAGGTGCTCCATCCTCTAT TGTGGCCTTTGTTGCTGGACCACTGTGCCCATCAAAGGTGGGCTCTCTTTCATCTTCTTC ACTATTAGTTTTTAGCTTCTCAAACTGAGTCAACTGTAATAATTGTTGACGGGATTGTAT TTTGCTAGGGCTACAAAGGAATGGGAAGAGCTGCAGATGATGATGGCTTAATTGCCTAAG AGCACGGTTAAAGAGGGATATGATTAATCGCCACAAGAAGAAGAGACTATGTTGACGGTA CATTCTTCCTTGGGTAACAAGTAAGTGTATCTCTAAGACCTAACCCTATTGGTTTACCAG ATGCTATGGGATCCTCCCTATAGTGAGTCGTATTA |
| GenBank Accession | AL768700 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:13052340 - go to primer design |
| BLAST e Value | 2e-104 |
| Hit Clone Code (BAC ID) | M7J2 |
| Hit Gene Code | At4g25560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myb domain protein 18 |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL768700 [GenBank] |
Gene hit At5g44110
| Sequence (A. th genome BLAST matches underlined) | >86-011919-strizhov-F11-8409 NTTTTGATCCATGTAGATCTTCCCGGACCATGAAGCCTTTACANTTGAATATGAGCTGAG GAGTTATACTTTACTACTTACTAATCTCTCCCTCTCTCTATCTGACTCTTTGATCGGAAA AAATGGCGGAGAAAAATGCGAGCGCGGCGGACGGTGCAATTAGGGTTAGTGGAATGCAGT TTTCTTACGATGTTCAAGATCCTATTTTCTTCGATTTTAATCTCGATCTTCCCGCTGGAT CTCGTTGCCTCTTGGTTGGTGCCAATGGATCTGGTAAAAATTATTCGAATCATTTCGATT TTGTGTGTGTTTCTGTTTCTGTGAATCTGAAGTAGATCGATTTGGGACCTTGACGAATAT AGAATGTATTATGTGATTTCGTGTGATTCTGTTTTGGTAGTGTTGGAATTCGGTTTAATT CGTCGAATTCGACTATATGTATAGAGTTTGAGTAAGTAAGATCGATTTTTCGACTATATG TATCATGTTAATACTCGAATTTGATTGATTCTGCTGAGAAGGTGATTGTCGTTGCGCGTT TCATTGACAGGGAAAACTACGTTATTGAAGATTCTTGCTGGAAAACATATGGTTGGAGGA AAGAATGTTGTACAAGTGCTTGATCGCTCAGCATTTCATGATACAGAGCTTGTTTGTAGT GGTGATTTGTCTACCTAT |
| GenBank Accession | AL768701 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:17755737 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MLN1 |
| Hit Gene Code | At5g44110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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