SimpleSearch - Line and FST details
Line specific information
| Line ID | 078H06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407482) |
| Segregation Analysis | 50:10:3 |
| Confirmed for Hit | At1g49340 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g49340
| Sequence (A. th genome BLAST matches underlined) | >48-K016174-022-078-H06-8409 TTTCCCGGACTGAAGCCTTCACAATTGAATACTCATTTACAACGGACTGAATTATCAACC CGAGAGCGGAGAAGAAAAGAGAGAGAAAAAAAGAAAGGGAAGGGACAAAAAAATAAATGG TGACTCAGGCGACCCACAAGCCCTTCCATGGCTGCTTCTTCTTCTTCCTCTCACCCAGAG ACACGAATTGAAGAAATTTGAATTCTACCACCAATTTTCTACACTCACATTTATGATTTT CCCGTTCTTGTTGGATCCTACGAGATTTTGACTCGATCTTCAGAGGCAGATCTGATCGCG AAAATTTCTTATTTCCAGCTAATTTTCCCGCAACGTTGTTTTTTTTGTTTAATCGGAGAT GGAGGCACTGACGGAGCTTTGTGACATTATAGCAAAGAATCCGAAGCAATTCTCGGAGAA GTTAGCTTGAATATGCGGTCGTTGTCCACAAACGGAATGGCTTCTCGCTGAATCGCCCAG GGTTTCTCGGAGACATCTCAACGCTGTTTTAGCCGATGCTCGGATCATCTCCAAGAATCC AGAATCAATCGATAATCTGCCAAAAATCCGACGATTAATGAGTTTCTCAGCGCTATACCT GCATCGTTCCGCCGTTCCTTCTGGCCGCATTCTTTTCCCTTCGCAGCTGATCTCTTCGTT TTATTGTGATTTCTTGAGTTATCTTTCGTGTGCGGCGGATCTATCCCCGGAATTTGGTAC A |
| GenBank Accession | AL937380 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:18252045 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F13F21 |
| Hit Gene Code | At1g49340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Phosphatidylinositol 3- and 4-kinase family protein |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
Gene hit At4g29680
| Sequence (A. th genome BLAST matches underlined) | >48-K016176-022-078-H06-8409 TGATCTGAAATTTCCCGGAATGAAGCCATTTACATTGATCATTTGCTGATACATGTAGAT TTTGCAGAACAGTAACTTGCTAAGATCATTAGTTCTCGATCACAAGCTACTGCATGTGTT TCCTATGGGATCCTCCGTATAGTGAGAGACACATTATCAGCTAAAAAACCTAAATCAGTT CCACAAGAAGAAGACCAAGACCCACCAAGCCAATCAATCGCACTTCTCGACAATCACACA GATTCCTCCGGTTCTGATTCTTCCACTATGGGATCCTCCCTATAGTGAGAGANNGNCGAA NNNCNGGNNNATGGNNTCCGAGGAGGCCGCACGGAAATAAGCCTACGATGAAAAGTGACT GTTGCCCAATGGACTTGAGAGACCGGATCTGTGATATTTTAGGAGTAAACAAGCGTGTGA TGCTCCACCATGTTGAGAAAGAGTCTCTTCGGGGCATAGAGCCAAGAGAGACTCTGAAGG AACTGGTGGCCGGTATTTAGGGCGAGCTCTGGGAGGTCCACTAGGTGAATATTATGACTC TATGGGATTGGCGAT |
| GenBank Accession | AL937381 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:14539634 - go to primer design |
| BLAST e Value | 4e-62 |
| Hit Clone Code (BAC ID) | T16L4 |
| Hit Gene Code | At4g29680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Alkaline-phosphatase-like family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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