SimpleSearch - Line and FST details
Line specific information
| Line ID | 081A06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407686) |
| Segregation Analysis | 100:97:70 |
| Confirmed for Hit | At5g44530 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4120, 4184 |
Gene hit At5g44530
| Sequence (A. th genome BLAST matches underlined) | >41-K016179-022-081-A06-8409 TGTCCTGTAGATTTCCCGGACATGAAGCCATTTACATTGAATATATTCAATATTCAATTG ACCATCATACTCTTTGTATAGATTTCGACATTGATCTAAGTCTTATTATTTTACTTACAA TGCACGAGGAGCGATTCCGCTATGGGATCCGCTCCCTATAGTGAGAGGATATGAGAGATG TCTCCCGTGTACCGTGAAGTCTTTGCCTCACTTCCAGTTCCCTAGATGCAATAAGATCCT GCCTATAGTGAGAGCGATTGTGCGTCATCTGTTACGACACGGAAGATATCAGATCTATCC ACTTGCTTCTTACAGGAGGTTGGTACTACTTCTTTTTCCACGTAGCTCCTCACGGATGGG GGCCCATCTTTGAGACCACTGTCCGAAGAGGCATCTTCAGCAATGGTCTTTCCTTTATCG CTATGATGGACTCTGGAGGAGCCACCTTCCTTTTCCAGTATCTTCTCAATATAGTGACAG ATAGCTGGGCAATGGAATCCAGAGGACGTTTCCTGGATATTACCCTTTGTTGACAAGTCT CGATTGCCCTTTGGACTTCTGAGACTGTATCTGTGATATTTTTGGAGTATACGAGCGTGT CGCGCTCCTACCTGTTGACGACGATTATCTTCTAGTGATGGATCCGCAATAGACTCGCTC GAAAATTGGTACGCCAGTCTTTACGGCGAGTTCTGGTAGGTCCTCTATTTGGATCTTTGA CTCCAGGGGAATTGGGGATCCTCTA |
| GenBank Accession | BX890742 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17939111 - go to primer design |
| BLAST e Value | 3e-29 |
| Hit Clone Code (BAC ID) | MFC16 |
| Hit Gene Code | At5g44530 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Subtilase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g45470
| Sequence (A. th genome BLAST matches underlined) | >41-K016180-022-081-A06-8409 TGTCATGTAGATTTCCCGGACATGAGCCATTTACAATTGATATATTCAATATTCAATTGA CCATCATACTCTTTGTATAGATTTCGACATTGATCTAAGTCTTATTATTTTACTTACAAT GCACGAGGAGCGATTCCACTATGGGATCTCCCCTATAGTGAGANNNNNNANGANNNTTTN NNGNNNCTTGNNNTNGAGNTCNNNNNGCTCTGGGATGCTCTATTTANNAAGATNGAGATT TTTNGTGGAGGTATTGGAAGTGTATTGNGGGTATTTGATTATGGTAANGTTGTGGGTGAA TTCATCATTTTTCATAAGAAACCTAACAAAGGCACAGATTTTCATGGAGCTGATGTCGTA GTTACTTATACGCTGTTTGCAGTTGGCCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | BX890743 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:18424040 - go to primer design |
| BLAST e Value | 2e-45 |
| Hit Clone Code (BAC ID) | MFC19 |
| Hit Gene Code | At5g45470 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transmembrane protein, putative (DUF594) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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