SimpleSearch - Line and FST details
Line specific information
| Line ID | 088B03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408367) |
| Segregation Analysis | 50:50:39 |
| Confirmed for Hit | At1g25280 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 67296, 96551 |
Gene hit At1g26120
| Sequence (A. th genome BLAST matches underlined) | >18-K016185-022-088-B03-8409 GATCCTGTAGATTTCCCGGACATGAAGCCATTTACCCACGCCTTATAACTGTATCAACAC AAGACATTCTGTAAGATATTTGCAGGTCTTTCTCCTCGACCTCAGATGCTTTATAATGAA AATAGAGTCCATTGGGTATGCATACTCACCCAATAATGCAGGCTCCACCAGTCACAAACG CCACAACTGGTTTTGGTCCAGTAGAGTTCTTAGGTAGATACAAGTCAAGCCTGAAGAAAC CAAAAACCAGCTTATACCAACGAACAAAACACAAACCAACTACTAGGCCCTATGGGATCC TCCCCTTATAGAGAGATGAGTATGGAGGTGATCCAGATAGGTACTATGGGATCCTCCGTA TAGTGAGATACNGCGGTGAATATAACCGCACTTGTAATGCCGGGGGAGTTATACTTCTGC GGATTGAAAATACCATTCGCTATTTCTTGAGACTCAATCGCTCCCCCGGATGACCCATAT ATGCAAGAGATATCGTCAACCAGAATGCAAGATCTTGACCCACCCATGAGTAACAATCTC ATAGTAACCTCAGTAGATGGAAGATCTTTCTTGGTCTATCCAGATAATAGGTAGGAGCAT ATGCTGAAGCATTCTGTAGCTACAAAGATAGTTATTAGATCGTTATGACCACTTAAAAAC ATTCCTCCTA |
| GenBank Accession | AL937627 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9030287 - go to primer design |
| BLAST e Value | 5e-114 |
| Hit Clone Code (BAC ID) | F14G11 |
| Hit Gene Code | At1g26120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | alpha/beta-Hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g25280
| Sequence (A. th genome BLAST matches underlined) | >18-K016184-022-088-B03-8409 TTTCCCGGAATGAAGCCATTACCCACGCCTTATAACTGTATCACACGAGACATTCTGTAA GATATTTGCAGTTCTTTCTCCTCGTCCTCAGATGCTTTATAATGAAAATAGTGTCCATTG GGTATCATACTCACCCAATAATCCAGGCTCCACCAGTCACAAACGCCACAACTGGTTTTG GTCCAGTACAGTTCTTACGTAGATACTAGTCGAGCCTGAAGAAACCAAAAACCACTTATA CCAACAAACAAAACACAAGCCAACTACTAGTCTCTATGGGATCTCCCTTATTAGTGAGAA CCAAACTGGAGAATCACCTTGTCTTGCTCAGGGTGAGCAGGTGCACTTGTTGGTGCTGCT GCTGCACCTGTCCCTTGAGGCTGCGGCTGTCTTGCTGCTACAAGCTGGAAATTCTTAACC GATGCAACTGTCACACGTCCGCGGAAATTCAAACACCAGCATTGCAACTGCTCGTGCCAC CTTGGCTGCTTGTTCTTTAGAATCAACGGTCTGAAACTCGCTTCTTCTTCGTTGTCGTCG CAGGATATTCCCATTTCGGAGAATCTATGGACTCCCCCCCTTAAAAGGGGAGANNNTGGN AAGNCCCCTCTATTTGAATCTTTGACTCCATGGGAATTGGGGATCCTCTA |
| GenBank Accession | AL937626 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:8866751 - go to primer design |
| BLAST e Value | 8e-150 |
| Hit Clone Code (BAC ID) | F4F7 |
| Hit Gene Code | At1g25280 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tubby like protein 10 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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