SimpleSearch - Line and FST details
Line specific information
| Line ID | 088G09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408433) |
| Segregation Analysis | 50:39:28 |
| Confirmed for Hit | At5g12930 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 92877, 92878 |
Gene hit At5g12930
| Sequence (A. th genome BLAST matches underlined) | >71-K016185-022-088-G09-8409 ATGAAGCACTCACAATTGATATATCCCGGAGTACAGGTCACACAGCTCACTATGGTATTC TCCTTATAGTGAGATGCTGCACNCATCANTATTCCTGAGTTCCCGATGAGAATGGATAGT CTTCTTTCTGATATGGATGAAATTACAGCTCCTTCATCCTCTGATTCACAAGCTACTGCA AACACACCCCATGGAGCTGTGCTGGAGGCTCCTGTTGATTCCGTGAAGGAGGAACCCGCA ACTTTGGGACAAACCAATAAATCAACGCCAGCTAAATCCTCAACGTCACTTATGAAATCT GTAAAGCCGCCTATCGATAACCTAGTCCATCCACTACTCGGAAGCCTGTTTCAGTTTCTT CTTCTTCAAGGGTGAGACGGGGTTCCTCTACAGGTGATTCAAAGAAACCTATGGGATCCT CCCTATAGTGAGAGAGAAAAAAAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATGT ATATGTCCGCCGCGTTATTATAACATGA |
| GenBank Accession | AL937734 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:4083585 - go to primer design |
| BLAST e Value | 9e-119 |
| Hit Clone Code (BAC ID) | T24H18 |
| Hit Gene Code | At5g12930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | inactive rhomboid protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g28630
| Sequence (A. th genome BLAST matches underlined) | >71-K016184-022-088-G09-8409 GATACATAATTCGATTAGATACACTAAACAGTAAATGCTAAAAATATTTGAGTAACACAT CAGTTAGCTATGGGATCCTCCCTATAGTGAGACNTCANGTTTAATCAGAATCACTTTTGG AGTGTAAAATGTCATCTGCATGTGATTTATGTAAAAATTGTGACTGAATAACAAAAAAGT TTAGAATACCCTAAATAGATTTTTCCAATAAGCCCTAAGTAGATAACTAACATTTTACCT AATTTGTCACGGTTTAGACTAATAACAACAAAATGTAAGAGAACGATTCTATGGGATCCT CCCTATAGTGAGAGGAGAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCAAAAATG TAAATGTCCGCAGCGTTATTATA |
| GenBank Accession | AL937733 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:14139040 - go to primer design |
| BLAST e Value | 2e-98 |
| Hit Clone Code (BAC ID) | T5F17 |
| Hit Gene Code | At4g28630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ABC transporter of the mitochondrion 1 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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