SimpleSearch - Line and FST details
Line specific information
| Line ID | 092H10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N408830) |
| Segregation Analysis | 50:48:31 |
| Confirmed for Hit | At3g58480 |
| Parent of DUPLO pair | 11754 |
| Parent of pair(s) | none |
Gene hit At3g58480
| Sequence (A. th genome BLAST matches underlined) | >80-011955-strizhov-H10-8409 ATGATCCATGTAGATCTTCCCGGACATGAAGCACTTTACAATTGATATGTTCCGAAAACT TCTATAAACTTTCTGTAACTTTAATGCAGCTTGATGTGTTCCACTCACCTAATAACAAGG CTAAAAATTCTTTTGCATGTTCGTTTTCGCAAACAGGTTTCCATATCCGCATTTTATATC TATCATCTTCTTTCATAAAAGTTAAAGGTTTAATAGAGAAATTGTTCTCCACATCTCCTG GAGAAATTCTTGATCGTTGTGTCCCTTTACCGCTAAGGGATCTGTTGTATAGCGTCTTTC TATGGGATCCTCCCTATAGTGAGTCGATTTACTCAANNNNNNNNNNNNNNNNNNNANNNG CNTNNNCNNNNNNACAGAAAAAAAAAAANNGANNACAAAANNGNGNAAACTATAAAAACN ANTCAAAGGGGATGGGCCAACACTATGGGATCCTCCCTATAGGGAGNCGGATTACTC |
| GenBank Accession | FR802802 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:21629747 - go to primer design |
| BLAST e Value | 7e-132 |
| Hit Clone Code (BAC ID) | F14P22 |
| Hit Gene Code | At3g58480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | calmodulin-binding family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g72930
| Sequence (A. th genome BLAST matches underlined) | >80-012001-strizhov-H10-35St TGACGTAAGGGATGACGCACAATCCCACTATCCTTCGAAGAGCCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCCATTTAAAGCTATGGGATCC TCCCTATAGTGAGTCGTATTACTCAAATAAGATAATGAGTATGGATAACATATTAACGAA CACAAATTCTCCTCTTAGTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCAATGNC CGCAGCGTTATTATAAAATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGT ATTTATAGGCGAAAGCAATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGT CTACATTCACGTCCAAATGGGGGCTTAGATGAGAAACTTCACGATCGATGCCTTGATTTC GCCATTCCCAGATACCCATTTCATCTTCAGATTGGTCTGAGATTATGCGAAAATATACAC TCATATACATAAATACTGACAGTTTGAGCTACCAATTCAGTGTAGCCCATTACCTTACAT AATTCACTCAAATGCTATGGGATCCTCCCTATAGTGAGTCGTATTAC |
| GenBank Accession | FR802803 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:27439281 - go to primer design |
| BLAST e Value | 2e-24 |
| Hit Clone Code (BAC ID) | F3N23 |
| Hit Gene Code | At1g72930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | toll/interleukin-1 receptor-like protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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