SimpleSearch - Line and FST details


Line specific information

 
Line ID 094E09
Vector Used pAC161
Line Availability available as T3 set from NASC (N408985)
Segregation Analysis 100:48:32
Confirmed for Hit At5g44050
Parent of DUPLO pair none
Parent of pair(s) 4770, 4784, 4804, 4861, 86176, 86213, 86226, 86267, 86279, 86291, 86312, 86352, 86357

Gene hit At5g44050

 
Sequence (A. th genome BLAST matches underlined) 
>69-012026-strizhov-E9-8409
NTGATCCATGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGGGTATG
CTGGCCTATACAGATATTGTGATGGTATATCTTTGACACCAAACTTGAACATCCAGCCCA
TGACAATTCCAAGTGGAAGTCCAATGAAATAGTAGCATCCCAAATTTATAAATGCGACTA
GTGATTGCCAACCCGAACCAACCGCAACACCTAAGCAAAATCAAAAGTCACCACACAACC
GTTGAACACGTTTATATTCGGTTAACAAAGAAAAAAAATCCAAATCAATTTGTTTATGTA
GCGTACCGGAGAGAACCGGTTGGACACTGTTGAGAAGAATCGCAAAGGATAAAAGAATAG
AGAGATTATTGACTGCTTTTAGGACAGTTTCACTTGAAGAGAACAGGCATCCTATTTGTA
CAGACTCATATTATCTGAGCACCGAAATGATTATTCCAATGATTAACGATTGTGTCACTG
ATATGATCATTGCGAATCTTGCTCTTTTTCCATTGCCTGCTCCTAATTCATTTGCCACTC
GTACGCTTAAAAAAAGAAAGGATTATCATCATATATATATTAATTAATGTACTATATACG
CATGTGAATGGGAAAATTTAAGATAACACTTCAAAAAACCTGTCGGACACAACTTTTAAT
GTGAATTGTAAAAATTTATTTCATTTATCACTCGTTTTCCACCCCTAGGAGAGTAGGTTT
TTCCCCCCTGGGCCCAAGGGGAATTGGGTAAAGGTTTTATAAGTTAACAAGGGCAAAATT
TGATTTAATTTGGTTTTG
GenBank Accession BX546527 [GenBank]
Graphic View Graphic view of gene At5g44050
Predicted Position of Insertion Chr5:17725898 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MRH10
Hit Gene Code At5g44050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37