SimpleSearch - Line and FST details
Line specific information
Line ID | 095G12 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N409108) |
Segregation Analysis | 50:49:47 |
Confirmed for Hit | At4g38380 |
Parent of DUPLO pair | none |
Parent of pair(s) | 6542, 6543, 6545, 6558, 8892, 8896, 8898, 85694, 85781, 85802, 85830, 85835, 85844, 85845, 85848, 85849 |
Gene hit At4g38380
Sequence (A. th genome BLAST matches underlined) | >95-012059-strizhov-G12-35St NATGGACGTAAGGGATCACGCACTATCCACTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTGACACCGCAATCAGGGTTAGTCTGGCTCTTGCGGCGAG TAACAAAAGGGAACATGGGGTTTGGATTGGTGTGAAGGGAGCATTTTTGGGGGGCAGAGA CATTATTGATCCGAGATAGAGGTAGAAAAGTCCCTTGTTGGATTTTGGGTTTGGCAAAGC TATGGGATCCTCCCTATAGTGAGTCGATTTTACTC |
GenBank Accession | AL770012 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr4:17974569 - go to primer design |
BLAST e Value | 3e-85 |
Hit Clone Code (BAC ID) | F22I13 |
Hit Gene Code | At4g38380 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | MATE efflux family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At3g27400
Sequence (A. th genome BLAST matches underlined) | >95-012025-strizhov-G12-8409 TGATCCATGTAGATTTCCCGGACTGAAACACTTGGAGAGAATAAGATATCCCTTCGTATA TTACTGGACAAACTCCAGTAAGGCTATAGAGGTGTTGCGTTATCCCTTTGTTACTCTTTG GCCATGTTGCTTTGCGTTTCTTGCCTATGTAATGCTTTGGTCTCCGTTCTTGCTATGGGA TCCTCCCTATAGTGAGACCTATTACTAAACTATATGAACCATAGTTAACTTTGGTTTTTT GGAAAAACCGAAAAGGGTTTTCCTAAATTTAAAGTTTAGTTTACAAAAACCCACTAATGG GGAACTGAATCTGTAAATGGGACCCATAGGGATAATTGAATCAAAAAAATATTGTAAAAC ATTTTTTATGGAAAAAAAGGCTGCATTTGGTTTCTACTTCGAATGTATGATATATCACTT ATATTAACAAAAGCAACATTGTTATATATATCAAACTTCAAATTATCATATTCAAAATTT TCTTTTTCACGTACCTGTTAACGTCGTCAACGACTATGGGATCCTCCCTATAGGGAGTCG |
GenBank Accession | AL770011 [GenBank] |
Graphic View | ![]() |
Predicted Position of Insertion | Chr3:10140892 - go to primer design |
BLAST e Value | 3e-122 |
Hit Clone Code (BAC ID) | K1G2 |
Hit Gene Code | At3g27400 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Pectin lyase-like superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |