SimpleSearch - Line and FST details


Line specific information

 
Line ID 100H02
Vector Used pAC161
Line Availability available as T3 set from NASC (N409590)
Segregation Analysis 100:27:19
Confirmed for Hit At5g60870
Parent of DUPLO pair none
Parent of pair(s) 12091

Gene hit At5g60870

 
Sequence (A. th genome BLAST matches underlined) 
>16-012073-strizhov-H2-8409
TGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAAGCCATTTAAGAAATT
GACTTCGACCGGAGTAGTTTGGATCTCAGGGAGACCTGGAACTCCTATGGGATCCTCCCT
ATAGTGAGTCGTATTACTCACNGNNGNNNAAGANCAGCTAATCGATATCAATTCTATATC
TCACTTAATATCACTTTCAATACTTAAATAGTCTTAACCTTGCCAAATATAACATATAGA
GTGTACTGGATTTGAAATAAGACTTTTTTTACTGGAACCATGTATTTTTGAAACTTCTTT
ATACATGGTATAGAATCCATAGCTTTTTAATTTTTACATGTAAATTAGTAATATAATGAA
AAAATAACCAACCCTAATTGGAAAAGTATGTGACCCAGCCTTTGAAAGGAATAGCAAATT
TATTCCTTAGTAATGTTGACCTTTGAAAACCCATAACGAGAAGAGCGTCTGGTCCATGAA
TTAGACACCATAATTGGCTAGCTATGGGATCCTCCCTATAGTGAGTCGATTACT
GenBank Accession AL755672 [GenBank]
Graphic View Graphic view of gene At5g60870
Predicted Position of Insertion Chr5:24485877 - go to primer design
BLAST e Value 8e-24
Hit Clone Code (BAC ID) MAE1
Hit Gene Code At5g60870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Regulator of chromosome condensation (RCC1) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g11760

 
Sequence (A. th genome BLAST matches underlined) 
>16-012073-strizhov-H2-8409
TGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAAGCCATTTAAGAAATT
GACTTCGACCGGAGTAGTTTGGATCTCAGGGAGACCTGGAACTCCTATGGGATCCTCCCT
ATAGTGAGTCGTATTACTCACNGNNGNNNAAGANCAGCTAATCGATATCAATTCTATATC
TCACTTAATATCACTTTCAATACTTAAATAGTCTTAACCTTGCCAAATATAACATATAGA
GTGTACTGGATTTGAAATAAGACTTTTTTTACTGGAACCATGTATTTTTGAAACTTCTTT
ATACATGGTATAGAATCCATAGCTTTTTAATTTTTACATGTAAATTAGTAATATAATGAA
AAAATAACCAACCCTAATTGGAAAAGTATGTGACCCAGCCTTTGAAAGGAATAGCAAATT
TATTCCTTAGTAATGTTGACCTTTGAAAACCCATAACGAGAAGAGCGTCTGGTCCATGAA
TTAGACACCATAATTGGCTAGCTATGGGATCCTCCCTATAGTGAGTCGATTACT
GenBank Accession AL755672 [GenBank]
Graphic View Graphic view of gene At4g11760
Predicted Position of Insertion Chr4:7079369 - go to primer design
BLAST e Value 6e-114
Hit Clone Code (BAC ID) T5C23
Hit Gene Code At4g11760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation low-molecular-weight cysteine-rich 17
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37