SimpleSearch - Line and FST details
Line specific information
| Line ID | 102C09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N409729) |
| Segregation Analysis | 100:83:76 |
| Confirmed for Hit | At1g78820 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 9665, 11861 |
Gene hit At1g78820
| Sequence (A. th genome BLAST matches underlined) | >67-K012380-022-102-C09-8409 GTGACCGATTCCTCCCTCCCGAATCAGATTTCTTCCAATTCCTTTCCGCTCATGTTTTAC AATACAACTCCTATGGAATCCTCCCTATAGGGAGTCGTATTACTCANNNNNNNNNGNNNN AGGNNNANCNNNNNNNCNCNNNNNGANNGNNGGNGGNNGGCGCGGCGNNGNCGNNNGCGA GCGGGGGGTCGCGCTAGGGAANGGCCCGGAGACCGGGGCGGGAGAGGAAACGCGAGCAGC NCCGACCGGGGAGGCCGGGGAACGGCACCCCGCCCACGCGCGGGGAAAGCGCGCCGGGGA AGGCCAAACCGGGGGAAAAGNAAGCGGAAGCGCAGGACCGNCGCGCAACCGGAGACGCCG CGCGGGGACANANNGGGNGGGGGGCGCNNCGCACGGCAAAAGGGCCCCCCCCGGGACGGA GGGACAGGGGACAAGACAGCAGGCGGCCGAACGAGAGGGGCACCCAAGAGAAAACAAAGG G |
| GenBank Accession | BX649694 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29635606 - go to primer design |
| BLAST e Value | 4e-10 |
| Hit Clone Code (BAC ID) | F9K20 |
| Hit Gene Code | At1g78820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g16670
| Sequence (A. th genome BLAST matches underlined) | >67-K012501-022-102-C09-35St AATACTGACGTAAGGGATGACGCACATTCCCCTATCCTTCGCAAGACCCTTCCTCTATAT AAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCG CCTTCGGTTTAAACTATCAGTGTTTGAGGGAAAGCTATGGGATCCTCCCTATAGTGAGTC GATATTACTCAANNNNNAAATGGNTNCACCACCGANAATTCNTCTGCGGGAAGGTCTCCG CCGTGGGAAGAGAGATAGAGTTCGCGTGGAGAAAGCTCATCTGCATTCCGCCGTGTCCAT TGCGTCTCTGGCGACGGCAATCGCCGCAGTGACCGCTTCAGGCAATCAAGACGGCTTCGC TGGATCAAAGATGAGCTCAGCCCTTGCCTCGGCGTCGGAGTTGTTAGCTTCTCACTGCCT CGAATTGGCGGAGCTTGCCGGCGCCGATCACGATCGCGTCGTCTCTGCTGTCCGATCAGC TGGTGATGTTCGNGGACCTGGCGATTTGTTGACTCTAACTGCTGCAGCTGCAACAGGTAC ATTGATTGTTTGACTTCAATTCTCAATCCTTGATTGTTTCGCTCTATTGAAATTGACTAN TGCATCGTAGCTTTGAGGGGATCAATTCCACTAGGAATCTCGGGTTTTCAAATAATGGAC A |
| GenBank Accession | AL755792 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9386231 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g16670 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | auxin canalization protein (DUF828) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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