SimpleSearch - Line and FST details
Line specific information
| Line ID | 105D09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410029) |
| Segregation Analysis | 50:49:35 |
| Confirmed for Hit | At4g02510 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note | |
Gene hit At4g00390
| Sequence (A. th genome BLAST matches underlined) | >68-K018338-022-105-D09-8409 CTAAAGAGCTTGACCCTATGTTGGATAAGAGTGTGCGTTTGACTGACCTTACGACTTACT TCCGTGATGCTTCAAACAACTAGAGCTACCAATTCAATGTAGCCC |
| GenBank Accession | BX001242 [GenBank] |
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| Predicted Position of Insertion | Chr4:171829 - go to primer design |
| BLAST e Value | 4e-26 |
| Hit Clone Code (BAC ID) | F5I10 |
| Hit Gene Code | At4g00390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA-binding storekeeper protein-related transcriptional regulator |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At5g23880
| Sequence (A. th genome BLAST matches underlined) | >68-K012137-022-105-D9-8409 NTGATCCATGTAGATTTCCCGGGACATGAAGCCTTTACAAGTTGAATATATCCTGCCCAA TGGATACCCCCTTCAACTCTAGAGAAAGACGGATATATGTATGATCAGCCTGCCTATGGG ATCCTACCTATAGTGAGTCTGATTACTCATAGGGTGAAATTACCTAGCGCCTGAGGCACA GGTCGACGTTCATAAAGACGTGGACCGAGACACAACTCATGAACATGACTTGAATCGCGG TCTTGGACCCGTCCTTTCTTACGTGAGGTTACGTTGGCAAGGCAGACCTCTTAATTTCCA TGATGCTGGCAATAGGGTGGCTCCTTTTACGATGCTTGTATCAAGAAGAACAAAGATGTA AGACATCTGCATGATATGCTCTGAGGATTTGGGATACACATAGGAAATCTTTTGCCATAA AGCTGCTTACGCTCTCGATTTGGCATGAGTGCAATTCTTCAAATGACTGCACTGGTTCTA CAGTTCCATCTTTATATTTTCCTTAACAACTGGATGCTTACTATG |
| GenBank Accession | AL756091 [GenBank] |
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| Predicted Position of Insertion | Chr5:8056014 - go to primer design |
| BLAST e Value | 3e-88 |
| Hit Clone Code (BAC ID) | MRO11 |
| Hit Gene Code | At5g23880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cleavage and polyadenylation specificity factor 100 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 105C09 |
Gene hit At4g02510
| Sequence (A. th genome BLAST matches underlined) | >68-K012182-022-105-D09-35St TTGACGAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTCGATAAATTTCCATCATATGCAGCAGTCAGGTCATCAGGTTC CTCAATATTTGAGATGGTCTTGTCAACCTCATCATCTTTATCATCTTCCTTAATTACAGC CTCCTTAGCCGCCCCGACAACCACAACCCCTGGCTCTGCATCATTGATACTCAGCATCAA CAGAGTCCACCACAGAGGAGTCAACCATAGAGTCTCCTTCACTAACCAACTTTCCTCCTC CCTCCTCTGTGGCTTTATCGGATTCAAGTTCAACTTCACCACCTTCACCTTGGCCAATTG GATCAAACTTATTATGCACATCAGGGATGTTGCCATCAGTTTCCAGCACCTCACTCACCT CTACGTCTCCAACAACAACAACCCCTGGCTTTGCCACATCTACATTCACAGCTTCAATAG CAGATGAGTCCACCACAAAGTCTCCTTTGTTGTTTAACTTAACACCTTCTTCTGCATCAT CGACTATGCCACCCGAGCACCCCTCTCTCCTCTTTGGTTCCATTGTCAGCTACTGCACTA |
| GenBank Accession | CT026109 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1106428 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T14P8 |
| Hit Gene Code | At4g02510 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | translocon at the outer envelope membrane of chloroplasts 159 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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