SimpleSearch - Line and FST details


Line specific information

 
Line ID 107B08
Vector Used pAC161
Line Availability available as T3 set from NASC (N307138)
Segregation Analysis 98:40:11
Confirmed for Hit At1g18890
Parent of DUPLO pair none
Parent of pair(s) 4735, 4759, 8516, 81973, 82003, 82033, 82081, 82108, 82131, 82253, 82282, 82298, 82311, 82326, 82352, 82364, 82393, 82407, 82413, 82421, 82427

Gene hit F11F19

 
Sequence (A. th genome BLAST matches underlined) 
>69-K020160-022-107-B08t-8409
GAGACGTCCGGTGAGAAGCCTTTCTAGTGGAGGTCCGCGGGGGGAGCTATAGGCGTATAG
TTCACCCCTCATAACAGTCGAAAGCACTCTGGTACTAGTATAGACGGTCCCTAATAAGAA
CTTTAATTGAAGGAAAATATGTATACGCTCGGGGATGCTGACTATAGTTCAGCCTGGGGA
TTATCCCAGAAGCCCATGTACTACTTCGTCTTGAATCTGTCTTTTGGCTGGTTCTAATGA
ATACCCGTATGGGATCCTCCGATCGGTGAGGTCCCTATGGGCCCGGACCATGTCTGATGA
GT
GenBank Accession BX530780 [GenBank]
Graphic View Graphic view of sequence BX530780 of line 107B08
Predicted Position of Insertion Chr2:15057427 - go to primer design
BLAST e Value 3e-12
Hit Clone Code (BAC ID) F11F19
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g18890

 
Sequence (A. th genome BLAST matches underlined) 
>58-K012498-022-107-B08-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTACGGCAAGGCCTAGTTAAGTCCTCTGTCAGAATAATACCACTC
TCTGATAAGTGATGATACTATCTGAGATGATCCATATCACGACTGCTTATACAAATAAAA
GAAGAAGCTAACCAGCCCAAAACGGAGGAACACCACAGAGCAAGATATAGATAATAACTC
CGGCACTCCACACATCAACCCCTGGTCCATAATCTCTCTTCAACACTTCTGGAGCCATAT
AATACGGACTTCCTACAATCTCTGTAAACTTATCTCCTACAATAAAGAAAACGTTATTTA
CCCAATCTCAGATATCTACACAAACTTCCATAAACATGAAGATATGGCAGGATAGTCTAA
AAATAGAACCATCCACTGAGTTAAGAAACACTAAAAATTGAATCTTTACCAGGTTTGAAG
AACACAGACAAGCCAAAATCAATAGCCTTTAGTGGAGAATTCTCCTTTTTATTAGCAAAC
AAGAAATTCTCAGGTTTCAAATCTCGATGCATAACTCCATTAGAGTGACACATCATCACA
ACCTCAGCAATCGTTCTCGCAACAGCTGCAGCAGCACGCTCCGTGTAATGTCCTCTATGG
GATCCTCCCT
GenBank Accession CT026110 [GenBank]
Graphic View Graphic view of gene At1g18890
Predicted Position of Insertion Chr1:6524711 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F6A14
Hit Gene Code At1g18890 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation calcium-dependent protein kinase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37