SimpleSearch - Line and FST details


Line specific information

 
Line ID 109G08
Vector Used pAC161
Line Availability available as T3 set from NASC (N410448)
Segregation Analysis 50:27:23
Confirmed for Hit At2g06005
Parent of DUPLO pair 2799
Parent of pair(s) none

Gene hit T16L4

 
Sequence (A. th genome BLAST matches underlined) 
>63-K012333-022-109-G08-35St
NACCTGACGAAGGGATGACGCACAATCCCACTATCCTTTCGAAGACCCTTCCTCTATATA
AGGAAGTTCACTTTACTTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCG
CCTTCGGTTTCTACCACTCTATGGGATCCTCCCTATAGTGAGTTATATTACATCACCCTT
TGTTATTTGATCTACCCTTTTCCCATCGCTCTGCTTTTCTTTTTTCTTTGCATTTTGCTT
TTCCTATACTCAAGAGTTCGTCTTTGTTATAACATGAGTTCTTTGAAATCTTAATGCACC
TTGAACATCTTGTATTCCGAAAGATTATAAGAATGGGTGTCAGTGCTATGGAGAATGTCA
GAAGAGTATTACAAACTCGGACACTCATCACTCTATGGGATTCACACTATGTGAGTATTN
NNACCTTACTGCCATAGCTGATCTAAGTGCACAACACAAGATTAGTCATATTGGCTCATA
TTATAATGGTATATTGGGAATCTTCCTTTATAGTCTAAAGAAACGGAAACAACAAATCTT
TCTGAATCCCTAAAAATGTCTAATTACAAAAGTATATATAAAGCTGTATAATTTTCCCTA
TGGGATCCTCCCTATAGTGAGTCNNNNN
GenBank Accession FR803215 [GenBank]
Graphic View Graphic view of sequence FR803215 of line 109G08
Predicted Position of Insertion Chr4:14518571 - go to primer design
BLAST e Value 2e-33
Hit Clone Code (BAC ID) T16L4
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g06005

 
Sequence (A. th genome BLAST matches underlined) 
>63-K012312-022-109-G08-8409
TTGATCCATGTAGATTGCCCGTACATGAAGCTACTTACAATTGATTACGATTCGACATAC
GTGTCCCAAGCACCACGCACAGAGCAACGCATATGTATATATCTCTTACGCTCTCATAAC
CAAATTTCTCTCTTCTTTAAATCAATTTTAAGCTGAAATTTCGATTTGGGTTTCATTTTC
CATGCAAATCTGTATTAAAAATGCTTCCCTTATTCAGTTTCTTGTTATGAACCAAAAAAA
GTTTACATTTTTACCAATGGTGTGTTCTTTGTAGGTTCCTTGATATATTGCATGAAGCAC
CATTATTTGGTCACAGGAAATCTATGGGATCCTCCCTATAGTGAGTCGTATTACTC
GenBank Accession AL756484 [GenBank]
Graphic View Graphic view of gene At2g06005
Predicted Position of Insertion Chr2:2332603 - go to primer design
BLAST e Value 2e-116
Hit Clone Code (BAC ID) T6P5
Hit Gene Code At2g06005 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation FRIGIDA interacting protein 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37