SimpleSearch - Line and FST details
Line specific information
| Line ID | 110A04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N410468) |
| Segregation Analysis | 50:49:39 |
| Confirmed for Hit | At3g52700 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At3g52700
| Sequence (A. th genome BLAST matches underlined) | >05-K115713-0022-110-A04C-8409 TAATGTAACCGTTGTATTCGATGACATTAAAACGTGGAACCAAATTAATTTTTTCGACAT CTAATTCATTTGTTCTTAACTTCTTATTATACTAAATATGATATTAGTTATTCACGTTGT CTCAATGTAGAACATATCTCACAACACCACATAGTAAATTTGGAAATCGTATATCAAGTC GTAAACAACAACACAGTACTACATAAGAGATTATTAGTTTTACAAAGCTAATTAGGGTTC TAAACAAACCAATAGACAATGTAAAACTATTTTAATTGGGTTTTTTCTTTTTGTTACCGG TTTCTTTTTTATCGACACGCTCGTGGTCGTGGAACATCTCAACTCTCCGGCCGTTGAGGG GTTGACACGGTCTTGAATTGTTCTTGAAAGAAGTGTCCAATGGAGATCTGAGTAGTTCTA CTTGTTCCTTTGACATTGACCTCACCTGCATTTAATTTATTATACACGGCAATCATAAAT CACGATGTCACGTTAATTTGGACCGTTTCCATACAAAAATGTCAAATAAACATGAAAGTA GTAGCTAGCTAGATGTTATCAATCGTATATATTGACTTCTCTATTCATTCAAACGTGAAT AACAAGTTTGACATAAAGGGTTTAGCTTAAAAGCAGGGGTTGTGGAGCCCAAAAGACACT CAAATTGGTTTGAATATCGTCCAGAANAATTAATAATGTATTAAGTTTGAAACTTCAATA TCGTTACGTACACTATGGTCTCAAAATCTTTAATGTGCTAGAATCAATTTTCGGTGGAAT TTAAATGTTTTTATTCTCCAAAACGATCACCA |
| GenBank Accession | HG967711 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19538558 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F3C22 |
| Hit Gene Code | At3g52700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | alpha carbonic anhydrase 1 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g26660
| Sequence (A. th genome BLAST matches underlined) | >25-K030265-022-110-A04-8409 GAAAGTAGCCATTTACATTGAATATATTCTGTGAATAGAACGGACGAACAACTACTGCAT ACTCCCAATGACAAAACCAAAAAATCGTAGAATAATAGTAAGAGATTCATTCTACAAAGA TATGATTCAGATATCATGTCACATTAAAAGCTTGTCCGAAGGAGGTAAAACAATTTTTGC TAGGTATTTATGTGAAGGTATGGCATCCTCCCTATAGTGAGATCACACGGCAAGAAGCTC TTGACTATATAGCACAAAGGGAGGAAAGAACTCAAAAGTAAGAGAAATCTTTGCTTTTCT AGTTTTCTTGCTCCATGTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | CR934530 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:9213092 - go to primer design |
| BLAST e Value | 6e-48 |
| Hit Clone Code (BAC ID) | T24P13 |
| Hit Gene Code | At1g26660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Prefoldin chaperone subunit family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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