SimpleSearch - Line and FST details
Line specific information
| Line ID | 111E05 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3748, 3816 |
| Note |
Gene hit At1g73080
| Sequence (A. th genome BLAST matches underlined) | >37-K012310-022-111-E05-8409 NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGCTGAT GAGGCTTGAGCTTTACAATTTTCAATCTTGATATGAGATTCTGCATGTTTCTCGATCTTT AAACTCAGATGAAGAATCTTCGCGGGGGTTGTCCAAAATACTTATGCTTTTCTTCTGTCT CTTTCTATCGACCCACACTAATTACCGTTTCTTGTTTAAACTCAGATGGGCTAACTCTAC TCTCTCTTCTGAAGCATTTGGATAGACCACCACCACAAGTTACTTCGACATGGAAAATAA ACGCATCTGAAGCAACTCCATGTAACTGGTTCGGTATCACTTGTGACGATTCTAAGAATG TTGCGTCTCTCAACTTCACTCGTTCTATGGGATCCTCCCTATAGTGAGTCGTTTAACTCA AGGCGGNNTTTNNNTTNTGCCAAATTGTACCAAGACAGCCTAAGATGGGGCAGAGCAATG TCATAACCGCTCAATCACGCGCGACTAAGGACGTCAAATCGGGCTTTCTCATTCAAAACT GCAACATCACAACAAGGTTCGGATC |
| GenBank Accession | AL756645 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:27484437 - go to primer design |
| BLAST e Value | 3e-153 |
| Hit Clone Code (BAC ID) | F3N23 |
| Hit Gene Code | At1g73080 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PEP1 receptor 1 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At3g27980
| Sequence (A. th genome BLAST matches underlined) | >37-K012331-022-111-E05-35St CTGACGTTGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTAAATTGCCTGTGATGATGGTTAAATCTTGACCATCACCTATAAGAGTTAAATTGGGT TTCGTATTCTCAACTGACGACGATGTCATCATAAATGCCTGTCTTTATATAGATGACGAA TCTCTTTTGGCTGTGTTGAGGTGCCGCTGCAATGGCCGCATTCACTGTGCTGTACTTTCC GGTCCCATCCTTCGCGACCACAACATCAGCAATCTTCTTTAGAGCCTGCTTTATAAGAAA CAGAAGAAATTCTATAAGCAGTAGAAAGAAAGAAAAAAAAGGATAAAAGGTTTGTTAAGA GGGTCAAACATATCGATCGAATTGTGTTCTTCATTACGTGACCTTAAGGTCTATTTTTAT ACAAGGGCTGATCTCTAAGGAAAAGGAATTATCTACCTAAAAGTAATTACAATAAAAGGT AAATATAAAAATCCTAAATATTTGTTACTTGAGTATCAAGTAAATCCTTAATATGGGGTT TCACGATCATCAAATTATAACCTCATAATATGAAGGGTCTGTTTTATTACCCTCACATTG AGATATAGATCCTTCTTTGGCAACAATGAATAACCAAGAAAGGCCATTGCGGAATCCCCG AGATAAGTTGGGTGTTGTCTTTCAGGGGAAAGGAGATAAAAAGAGCCAAAACTACTCTTG CC |
| GenBank Accession | AL756646 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:10395026 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | K24A2 |
| Hit Gene Code | At3g27980 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant invertase/pectin methylesterase inhibitor superfamily |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 111B05 |
|
Last Updated on 10.06.2021 13:37 |
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